RNA id: TCONS_00051576


Basic Information

Item Value
RNA id TCONS_00051576
length 953
RNA type mRNA
GC content 0.42
exon number 4
gene id XLOC_026470
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32066983 ~ 32071468 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGATCACTTACGGGCCAGATAGAGAGGGCAGGGATGAGTGTGCCCTCTCTTCCTGAGACGCAGCCAATGAATGATGATCAGGAGCAACTTCTGGAGCAGATTACTAACGTCATTCTACTAATCGGTGATGTTGTAGATCGAGACCAAACAATCATAAACTTGACTGATAGGTTTGCATGCGTGCTGGAAAGACAGCATTTCCAGAGACTTGCAGACAAAGTGTTTCAGGATGGTATCACCTGGGGAAAAATTGCTTCCCTGATCTGTATTGTTGGAAAAACAATTGTGAAGattattggCAATTACATTCCTGACTTTGTGTCTTGGACACTGCATTACTTCAAGGATAACCTACAGACCTGGATCTGCAATATGGGAGGATGGATCAATAGTATCTCCTCCTTGGCCCGTTTCTCCCTTGAGTTGGATTTGGGCTCCTCCTCCAGTATGATCTGGTCCTCCTCTGGACTCCTCTTCATCAGTGGAATGCTGTTAGGAGGCTTCATCGTCTGGAGCCTGATTAGACGAGCCTGAGGAGGGTCAGTGGAGAAGAGATGAGCTGAGGAAAAGCAGAGATTCAGAAATGCAGAATCTGTGGTCTACGTGTCTTTGCATCTCTGCAGATCATGTGAATGAGGAAGGATACAAGAAAGGTGTAGGATTTTCTCAAATTGAAGCCAGCAAGACTTGACATTTCATTTGTGCTGTGCCAAGAGGACTCACTGAAAAAAATGGTTCATTGCGAACTGttgcaaacattttatataagctgaatttaaacaaagattAAGGTGAAAATTACCACATTTAATTGTTGCTTAAATTCAGCatatataaattgtttataacttaccttaaaaaatgaaGCTCATCCAATGAATCTTGCTTTTCAGTGCTGCTCATTGCAGTTTCTgtgcctacagttgaagtcagaattatttgcccccctttga

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000121979

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053055 lncRNA downstream 11605 31876848 ~ 32055378 (-) True XLOC_026466
TCONS_00053056 lncRNA downstream 109617 31935697 ~ 31957366 (-) False XLOC_026469
TCONS_00053058 lncRNA downstream 109621 31951309 ~ 31957362 (-) True XLOC_026469
TCONS_00053057 lncRNA downstream 114470 31951309 ~ 31952513 (-) False XLOC_026469
TCONS_00051575 lncRNA downstream 142397 31922493 ~ 31924586 (-) True XLOC_026468
TCONS_00051581 lncRNA upstream 101066 32172534 ~ 32180804 (-) False XLOC_026473
TCONS_00051583 lncRNA upstream 104878 32176346 ~ 32180815 (-) False XLOC_026473
TCONS_00053059 lncRNA upstream 114431 32185899 ~ 32221962 (-) False XLOC_026474
TCONS_00051586 lncRNA upstream 123284 32194752 ~ 32196043 (-) False XLOC_026474
TCONS_00051588 lncRNA upstream 124724 32196192 ~ 32222085 (-) False XLOC_026474
TCONS_00051574 mRNA downstream 142340 31919042 ~ 31924643 (-) False XLOC_026468
TCONS_00051572 mRNA downstream 173975 31879442 ~ 31893008 (-) False XLOC_026467
TCONS_00051571 mRNA downstream 187782 31875772 ~ 31879201 (-) False XLOC_026466
TCONS_00051570 mRNA downstream 191845 31850851 ~ 31875138 (-) True XLOC_026465
TCONS_00051569 mRNA downstream 233717 31816814 ~ 31833266 (-) False XLOC_026464
TCONS_00051577 mRNA upstream 3338 32074806 ~ 32079916 (-) True XLOC_026471
TCONS_00051578 mRNA upstream 85672 32157140 ~ 32170878 (-) False XLOC_026472
TCONS_00051579 mRNA upstream 85792 32157260 ~ 32170850 (-) False XLOC_026472
TCONS_00051580 mRNA upstream 85869 32157337 ~ 32169754 (-) True XLOC_026472
TCONS_00051582 mRNA upstream 101261 32172729 ~ 32180833 (-) False XLOC_026473
TCONS_00051529 other downstream 1266325 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051520 other downstream 1578889 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051482 other downstream 2196859 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 2198251 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051479 other downstream 2199443 29867404 ~ 29867540 (-) True XLOC_026417
TCONS_00051585 other upstream 114666 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051635 other upstream 901506 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051656 other upstream 1352724 33424192 ~ 33424328 (-) True XLOC_026505
TCONS_00051678 other upstream 1877201 33948669 ~ 33948788 (-) True XLOC_026513
TCONS_00051702 other upstream 1951697 34023165 ~ 34023613 (-) True XLOC_026529

Expression Profile

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