RNA id: TCONS_00053058


Basic Information

Item Value
RNA id TCONS_00053058
length 768
lncRNA type antisense_over
GC content 0.38
exon number 3
gene id XLOC_026469
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31935697 ~ 31957366 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTGGGATGGGGGTTGGTTGTAAGGACAGATACGCCTATAAAAGATAACAGCACTATGCCGACAGAGCGAGAAGAGAACAGGTTACAGCCACAGAGAGGAAAGTGAGGGAATGACTGCAGTAAAGTGAAGCTTCTTTGGATTTTTCTACTTGCTATCCCACTGCAGTTGAAGCTCAGCGGTGCTCAAAGGCCACCTAGAGGACTCACTGAGAAACTGCACAACACAAAATACTGCAGTACCCCCTCCTCTATAAGCTTTCTCCCCGACTGAGGTTTGATTCGTGAGGACAAGAAGTGTAGTGTTTAAGTGCGCACTACTGTGAAATCCTCATGGGTTGTCTAGGTGTGCAGCCAACTGCCTGTTCAGCGATATTTCTGGCTCTCCCAGGCCTTccctctttacttttttttttcctgaacccATTTCTGTTAAGTTCCACAGGAGAAAGAACATAGTACAGGTTAAGAAAAACATGagcacagaatttttttttttataaatcaaacctttataataataatgcttattcaaatattaattaaaatatttggttattttggttattatctaattaatatttgaatattttggtTATTCAAATACTAATCAGAATTTAAAAGGTTAAATTAGGCTGTGACAAAAACAGTATGAAACAAAGTGCTGagtaaactatctctttagggCAAAAGAATATATACAGAGAGAGAAATATACCCAGAAAAAGGCACATGTTCcagatcaataaatcaataatgtTTCCACCAATC

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0048513 animal organ development biological_process
GO:0007275 multicellular organism development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048856 anatomical structure development biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0048880 sensory system development biological_process
GO:0003008 system process biological_process
GO:0032502 developmental process biological_process
GO:0001654 eye development biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051575 lncRNA downstream 26723 31922493 ~ 31924586 (-) True XLOC_026468
TCONS_00051573 lncRNA downstream 59484 31889596 ~ 31891825 (-) True XLOC_026467
TCONS_00053054 lncRNA downstream 300598 31650253 ~ 31650711 (-) True XLOC_026460
TCONS_00052472 lncRNA downstream 351027 31511470 ~ 31600282 (-) False XLOC_026457
TCONS_00051581 lncRNA upstream 215172 32172534 ~ 32180804 (-) False XLOC_026473
TCONS_00051583 lncRNA upstream 218984 32176346 ~ 32180815 (-) False XLOC_026473
TCONS_00053059 lncRNA upstream 228537 32185899 ~ 32221962 (-) False XLOC_026474
TCONS_00051586 lncRNA upstream 237390 32194752 ~ 32196043 (-) False XLOC_026474
TCONS_00051588 lncRNA upstream 238830 32196192 ~ 32222085 (-) False XLOC_026474
TCONS_00051574 mRNA downstream 26666 31919042 ~ 31924643 (-) False XLOC_026468
TCONS_00051572 mRNA downstream 58301 31879442 ~ 31893008 (-) False XLOC_026467
TCONS_00051571 mRNA downstream 72108 31875772 ~ 31879201 (-) False XLOC_026466
TCONS_00051570 mRNA downstream 76171 31850851 ~ 31875138 (-) True XLOC_026465
TCONS_00051568 mRNA downstream 118043 31816814 ~ 31833266 (-) True XLOC_026464
TCONS_00051576 mRNA upstream 109621 32066983 ~ 32071468 (-) True XLOC_026470
TCONS_00051577 mRNA upstream 117444 32074806 ~ 32079916 (-) True XLOC_026471
TCONS_00051578 mRNA upstream 199778 32157140 ~ 32170878 (-) False XLOC_026472
TCONS_00051579 mRNA upstream 199898 32157260 ~ 32170850 (-) False XLOC_026472
TCONS_00051580 mRNA upstream 199975 32157337 ~ 32169754 (-) True XLOC_026472
TCONS_00051529 other downstream 1150651 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051520 other downstream 1463215 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051482 other downstream 2081185 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 2082577 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051479 other downstream 2083769 29867404 ~ 29867540 (-) True XLOC_026417
TCONS_00051585 other upstream 228772 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051635 other upstream 1015612 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051656 other upstream 1466830 33424192 ~ 33424328 (-) True XLOC_026505
TCONS_00051678 other upstream 1991307 33948669 ~ 33948788 (-) True XLOC_026513
TCONS_00051702 other upstream 2065803 34023165 ~ 34023613 (-) True XLOC_026529

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000069_03506556_03507031.mRNA True 1109 mRNA 0.41 2 CI01000069 3506255 ~ 3507557 (-)