RNA id: TCONS_00053054


Basic Information

Item Value
RNA id TCONS_00053054
length 459
lncRNA type intronic
GC content 0.37
exon number 1
gene id XLOC_026460
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31650253 ~ 31650711 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGGCTTCTGGGCTCACTCGTGGTAAGTCATCATTCTGTAATTCATAATTAATATAGATTATTAATCACTTTACTCCTGCATTTCTGATAGAAGTTACTGCTTTTAGATCATTGAATTAGGTCCAGATTTAAAGGACAGGAGTCATATATTTGATCAGTTTCATACCAGACAATCCAAGTAAATCTCcttgcttttttctgtttttcaggaCTCGATCTGACTCAGTTTGAAGTCGGAGACCTGATTGGAGAAGGAGCTTTTGGCCAGGTGTATGTGGCATCTCACAAACGCAGTAAAAGAGTAAAGGTAaagaactacttttttaaaattcaatCAACATTTTCCTCctgattaataaatataaataatttgttggctttaatttaatttgttgttgtttttccgcAGGTTGCCCTGAAGTGCATGGTGAAGAGTCAACAGGACCGTTATCTGGACG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052472 lncRNA downstream 49971 31511470 ~ 31600282 (-) False XLOC_026457
TCONS_00052473 lncRNA downstream 49971 31511774 ~ 31600282 (-) False XLOC_026457
TCONS_00052474 lncRNA downstream 132936 31516690 ~ 31517317 (-) True XLOC_026457
TCONS_00053053 lncRNA downstream 473044 31174133 ~ 31177209 (-) True XLOC_026453
TCONS_00051549 lncRNA downstream 541610 31105368 ~ 31108643 (-) False XLOC_026451
TCONS_00053055 lncRNA upstream 226137 31876848 ~ 32055378 (-) True XLOC_026466
TCONS_00051573 lncRNA upstream 238885 31889596 ~ 31891825 (-) True XLOC_026467
TCONS_00051575 lncRNA upstream 271782 31922493 ~ 31924586 (-) True XLOC_026468
TCONS_00053056 lncRNA upstream 284986 31935697 ~ 31957366 (-) False XLOC_026469
TCONS_00053057 lncRNA upstream 300598 31951309 ~ 31952513 (-) False XLOC_026469
TCONS_00051560 mRNA downstream 30790 31607086 ~ 31619463 (-) True XLOC_026458
TCONS_00051559 mRNA downstream 32216 31606781 ~ 31618037 (-) False XLOC_026458
TCONS_00051558 mRNA downstream 391794 31257172 ~ 31258459 (-) True XLOC_026456
TCONS_00051557 mRNA downstream 395274 31250066 ~ 31254979 (-) True XLOC_026455
TCONS_00051556 mRNA downstream 395874 31249885 ~ 31254379 (-) False XLOC_026455
TCONS_00051562 mRNA upstream 54743 31705454 ~ 31716157 (-) False XLOC_026461
TCONS_00051563 mRNA upstream 55548 31706259 ~ 31715714 (-) True XLOC_026461
TCONS_00051564 mRNA upstream 78160 31728871 ~ 31784082 (-) False XLOC_026462
TCONS_00051565 mRNA upstream 78165 31728876 ~ 31783737 (-) True XLOC_026462
TCONS_00051566 mRNA upstream 141730 31792441 ~ 31804481 (-) True XLOC_026463
TCONS_00051529 other downstream 849595 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051520 other downstream 1162159 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051482 other downstream 1780129 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 1781521 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051479 other downstream 1782713 29867404 ~ 29867540 (-) True XLOC_026417
TCONS_00051585 other upstream 535423 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051635 other upstream 1322263 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051656 other upstream 1773481 33424192 ~ 33424328 (-) True XLOC_026505
TCONS_00051678 other upstream 2297958 33948669 ~ 33948788 (-) True XLOC_026513
TCONS_00051702 other upstream 2372454 34023165 ~ 34023613 (-) True XLOC_026529

Expression Profile

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