RNA id: TCONS_00051556


Basic Information

Item Value
RNA id TCONS_00051556
length 1742
RNA type mRNA
GC content 0.36
exon number 2
gene id XLOC_026455
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31249885 ~ 31254979 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCCTCTTCTTCAGTGCTTTCAGCCATCAATCAGATCTATCATTCGCCATCATGACTGAGTCTGCCGAGGCGGTGGCTGCCAACGTGAGCAGCAGGAGACACGCCACCGTAGAGATCACCAACCTGACAAACAACTACTGCTTCCTCAACCCAAAGGTTTATCTAGAGAACGGTGAAACCTCCAATCCACCTCAGCCCACAGTCCGCCCCCTCAAGACTGAAGTGTGTACTTTCAGCAAGAGCGCTGCACATGCCACTGGCAGCGTGGGGGTTCTGACCTACGACCTGTTCGAGCGAAGAAGAAATGACTACACTGAGACCCTGGCCATCATGTTTTCTGTCCCTTGGGACTACAATCTGTATAAAAATTGGTTTGCTGTGGGCATCTACCCTAAAGGAAAAGAGTGTGACCAGGCACTTTATAAAGAAATGTACTATCAAAAGAACCAGCACGGCTTTGTGAGGGAGGAGGCCAATGGGTCAGGCATTAACTTCGAGGGTAAAAACCTAGACATCAGGGCCACCATGTGTCCTATGGGCAGGGCGATCGTAAAAGTGGAGGTGTGGGACAAGCTGTTGAGTCCTATGGCTCAGATGGATTGCTAAATGTATAAGTTAGTCAGCCATTTCTAAAGCCATTGCTGAATCAAAATGAGAGGTATTTCTTGAACAGAGGAAATGAAATTGTACAGATAATGGAGCttgatttatatatgtatacagtagTCAGCATTCAAAgggaattaaaaatatttttcaaaattgtcttaGAAGAAGTATGGGTtctgttcaatagttttaggacgaATTTGATATTTGATGAAAGGTGACAATCCACTTCAAATACtgacaactgtatatatatatatttcccatcACAAGCTTCTACTCAGGATAAAGGAttctcaaatatatacatttttttaaatacaaagacgAAATGTAAACTagacattaattaataaaaaagtcaGGTGGCTTAAATGAATTGCATATAAAATTGACAAATGATATTTGAAATTAATGGTCACTCAACAGACcaataatgtcaataataataataatttttattagtattattattgttattattttaagtaaatgaaCCAAAAAACTCTCCAAaagttcatttttaaattgaatttcCCTACTTCACAAATGTTGGTTTTGCTTATAAAGTACCTGACAATTTCTCTTTCTCATGTTGATTCATATCCTTAAATGTTGAGTGTTGTTGATTTCATTAAGCTGTACCATAAAAACTGTACAATATATTCAGGAATTTGCAAGAGAACTGTATTCATATACAATGGAAACTAATAAAATAAGATCTGATTGTCactgtttactttattttctgtAAACCTATTACTTTCTGTGCATTGTTTTGCATagtaaaataaaaacccattttcTAATTTCAATGTAAGATGTCGTTTGCCATTTTGCCTTTTTTTGTGACAGTTTTGTCACTTGAAGTATATtcaatttaaagtaaaatttaatttaaaagaaaagttcaaccaatttcatttttgtaaaataaagtaGAACGCTAAAGAAAATGTTTGGCTGAAACTGTGGTCTTTGGTGATTCTTGCAAGTCTGCGGTCACACTTTACACTTTAGGAGTAAAAAGTATACATACAGGCAAAACAATGTTAATGTCATTACATGTTATGATGCGTCACAAAACTTATCAtctgtggattaaaggtaataaaaaAGGTTTCGTTTCTTGC

Function

GO:

id name namespace
GO:0052331 hemolysis in other organism involved in symbiotic interaction biological_process
GO:0046931 pore complex assembly biological_process
GO:0006812 cation transport biological_process
GO:0046930 pore complex cellular_component
GO:0019898 extrinsic component of membrane cellular_component
GO:0015267 channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8907 Predicted to enable channel activity. Predicted to act upstream of or within cation transport; hemolysis in other organism involved in symbiotic interaction; and pore complex assembly. Is extrinsic component of membrane.

Ensembl:

ensembl_id ENSDART00000189376

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053053 lncRNA downstream 72676 31174133 ~ 31177209 (-) True XLOC_026453
TCONS_00051549 lncRNA downstream 141242 31105368 ~ 31108643 (-) False XLOC_026451
TCONS_00053052 lncRNA downstream 156121 31093212 ~ 31093764 (-) True XLOC_026450
TCONS_00051546 lncRNA downstream 167518 31080680 ~ 31082367 (-) False XLOC_026449
TCONS_00053051 lncRNA downstream 191595 31041952 ~ 31058290 (-) True XLOC_026446
TCONS_00052472 lncRNA upstream 257091 31511470 ~ 31600282 (-) False XLOC_026457
TCONS_00052473 lncRNA upstream 257395 31511774 ~ 31600282 (-) False XLOC_026457
TCONS_00052474 lncRNA upstream 262311 31516690 ~ 31517317 (-) True XLOC_026457
TCONS_00053054 lncRNA upstream 395874 31650253 ~ 31650711 (-) True XLOC_026460
TCONS_00053055 lncRNA upstream 622469 31876848 ~ 32055378 (-) True XLOC_026466
TCONS_00051553 mRNA downstream 23044 31201542 ~ 31226841 (-) False XLOC_026454
TCONS_00051555 mRNA downstream 31611 31212722 ~ 31218274 (-) True XLOC_026454
TCONS_00051554 mRNA downstream 31659 31210282 ~ 31218226 (-) False XLOC_026454
TCONS_00051551 mRNA downstream 91448 31118026 ~ 31158437 (-) False XLOC_026452
TCONS_00051552 mRNA downstream 91503 31118030 ~ 31158382 (-) True XLOC_026452
TCONS_00051558 mRNA upstream 2793 31257172 ~ 31258459 (-) True XLOC_026456
TCONS_00051559 mRNA upstream 352402 31606781 ~ 31618037 (-) False XLOC_026458
TCONS_00051560 mRNA upstream 352707 31607086 ~ 31619463 (-) True XLOC_026458
TCONS_00051561 mRNA upstream 393161 31647540 ~ 31655796 (-) True XLOC_026459
TCONS_00051562 mRNA upstream 451075 31705454 ~ 31716157 (-) False XLOC_026461
TCONS_00051529 other downstream 449227 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051520 other downstream 761791 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051482 other downstream 1379761 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 1381153 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051479 other downstream 1382345 29867404 ~ 29867540 (-) True XLOC_026417
TCONS_00051585 other upstream 931755 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051635 other upstream 1718595 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051656 other upstream 2169813 33424192 ~ 33424328 (-) True XLOC_026505
TCONS_00051678 other upstream 2694290 33948669 ~ 33948788 (-) True XLOC_026513
TCONS_00051702 other upstream 2768786 34023165 ~ 34023613 (-) True XLOC_026529

Expression Profile

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