RNA id: TCONS_00051558


Basic Information

Item Value
RNA id TCONS_00051558
length 821
RNA type mRNA
GC content 0.42
exon number 2
gene id XLOC_026456
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31257172 ~ 31258459 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTTTATGACTTCTACAGGAACAACATGAACATGCAGACTGCAGAGGCCGTGTCAGCGACCATAAACACCAACCGGAACTGTACTGTGGAGATCACCAATATTAGCTCCGCTTACTGTCTTATCAATCCAAAAGTGTGTATGACCAGTGGGTTCAGCTTCCATCCTCCTCAACCCACCATCCGCACCGCCAAGACCGAGGTTTGCTCTTTCACCAAAGATGATAACACTGCAACTGGGGCTGTGGGCGTCTTGACCTATGACCTATTCCACATGCAGAACCACATGTGCACTGAGCGCATGGCCATTCTGTTCTCCGTCCCCTATGATTACCACCTCTACAAGAACGTCTTGGGCATAGGCATTTTTGAGAGCAGCCGGGAATGCAATAAAGCCCTGTACAAACACATGTATGAGGGGAAAGACTTCAGCCAGTTCACCCGGGTCGATGCAGGAGGATCTGGAGTCCTGCACAGGGGAAAAAAAGTCGACTTAAGAGTCACCATGTCTACTGTCGGCAAGGCTATTCTTAAGCTGGAGGTGTACGATAAGATGGGCTAAATAATAAGCAGATTTAGTATGGCATTAACAGAATATGTTTAGTTATTCATTTTAATGTGATACTTGCATAATCATATACAAAATCATATAGACATGCATGCCATTGTGCTTTCAAATACTGCAGTTACATTTTGATATCTGTTCATGGATTTATGCGGTCTGTTTTCATAATAATGTTTTTGCAAAAATttgtctgaataaaaaaaaatcactaatttAATGTTGTGTCCGTTTAATTGTGTTTgcaataatgtaatgtt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000177928

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053053 lncRNA downstream 79963 31174133 ~ 31177209 (-) True XLOC_026453
TCONS_00051549 lncRNA downstream 148529 31105368 ~ 31108643 (-) False XLOC_026451
TCONS_00053052 lncRNA downstream 163408 31093212 ~ 31093764 (-) True XLOC_026450
TCONS_00051546 lncRNA downstream 174805 31080680 ~ 31082367 (-) False XLOC_026449
TCONS_00053051 lncRNA downstream 198882 31041952 ~ 31058290 (-) True XLOC_026446
TCONS_00052472 lncRNA upstream 253011 31511470 ~ 31600282 (-) False XLOC_026457
TCONS_00052473 lncRNA upstream 253315 31511774 ~ 31600282 (-) False XLOC_026457
TCONS_00052474 lncRNA upstream 258231 31516690 ~ 31517317 (-) True XLOC_026457
TCONS_00053054 lncRNA upstream 391794 31650253 ~ 31650711 (-) True XLOC_026460
TCONS_00053055 lncRNA upstream 618389 31876848 ~ 32055378 (-) True XLOC_026466
TCONS_00051557 mRNA downstream 2193 31250066 ~ 31254979 (-) True XLOC_026455
TCONS_00051556 mRNA downstream 2793 31249885 ~ 31254379 (-) False XLOC_026455
TCONS_00051553 mRNA downstream 30331 31201542 ~ 31226841 (-) False XLOC_026454
TCONS_00051555 mRNA downstream 38898 31212722 ~ 31218274 (-) True XLOC_026454
TCONS_00051554 mRNA downstream 38946 31210282 ~ 31218226 (-) False XLOC_026454
TCONS_00051559 mRNA upstream 348322 31606781 ~ 31618037 (-) False XLOC_026458
TCONS_00051560 mRNA upstream 348627 31607086 ~ 31619463 (-) True XLOC_026458
TCONS_00051561 mRNA upstream 389081 31647540 ~ 31655796 (-) True XLOC_026459
TCONS_00051562 mRNA upstream 446995 31705454 ~ 31716157 (-) False XLOC_026461
TCONS_00051563 mRNA upstream 447800 31706259 ~ 31715714 (-) True XLOC_026461
TCONS_00051529 other downstream 456514 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051520 other downstream 769078 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051482 other downstream 1387048 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 1388440 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051479 other downstream 1389632 29867404 ~ 29867540 (-) True XLOC_026417
TCONS_00051585 other upstream 927675 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051635 other upstream 1714515 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051656 other upstream 2165733 33424192 ~ 33424328 (-) True XLOC_026505
TCONS_00051678 other upstream 2690210 33948669 ~ 33948788 (-) True XLOC_026513
TCONS_00051702 other upstream 2764706 34023165 ~ 34023613 (-) True XLOC_026529

Expression Profile

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