RNA id: TCONS_00052472


Basic Information

Item Value
RNA id TCONS_00052472
length 502
lncRNA type inter_gene
GC content 0.49
exon number 4
gene id XLOC_026457
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31511470 ~ 31600282 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGAGAAGCTTGAAGTCACAGGTGGATGTCCTTATCCAGGTGAAACACCGCAGGATGCTTCTGAACTGCAGCACTGAGGGACGACTCCTGTGTCTCTTCTCCTGAAGAATGATGAATAACTCAACACCTCCACTACAGCTCAGTCCTGATCATGAATATTCACAGTCTGCCTGGCTGGGACGGCCCTCCCTGGACTGCAgcgaggagagaaagagagagagacacaaaATGAAAGAGGAATGTGCAAACACTTGAACCTGAGAGCAGATCAAGTAGGAAATGAACGCAGCACAACATGATGGAGCGAGAGGAAGATGGATGTACGGATAGCAGAAGAGATCCTTAAACATAATTTCTGTGTAAAAACTTCACCTTGGGGGGTGTTTGTCGCTGAGGCACTTCTGATCAGAAAAGGGCACTTGGAAGGACAccttctatccaagactaaaaagggcatgtgcattgtacaggttgagccctatgtgtgcacgtgcctggcgCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053053 lncRNA downstream 334261 31174133 ~ 31177209 (-) True XLOC_026453
TCONS_00051549 lncRNA downstream 402827 31105368 ~ 31108643 (-) False XLOC_026451
TCONS_00053052 lncRNA downstream 417706 31093212 ~ 31093764 (-) True XLOC_026450
TCONS_00051546 lncRNA downstream 429103 31080680 ~ 31082367 (-) False XLOC_026449
TCONS_00053051 lncRNA downstream 453180 31041952 ~ 31058290 (-) True XLOC_026446
TCONS_00053054 lncRNA upstream 49971 31650253 ~ 31650711 (-) True XLOC_026460
TCONS_00053055 lncRNA upstream 276566 31876848 ~ 32055378 (-) True XLOC_026466
TCONS_00051573 lncRNA upstream 289314 31889596 ~ 31891825 (-) True XLOC_026467
TCONS_00051575 lncRNA upstream 322211 31922493 ~ 31924586 (-) True XLOC_026468
TCONS_00053056 lncRNA upstream 335415 31935697 ~ 31957366 (-) False XLOC_026469
TCONS_00051558 mRNA downstream 253011 31257172 ~ 31258459 (-) True XLOC_026456
TCONS_00051557 mRNA downstream 256491 31250066 ~ 31254979 (-) True XLOC_026455
TCONS_00051556 mRNA downstream 257091 31249885 ~ 31254379 (-) False XLOC_026455
TCONS_00051553 mRNA downstream 284629 31201542 ~ 31226841 (-) False XLOC_026454
TCONS_00051555 mRNA downstream 293196 31212722 ~ 31218274 (-) True XLOC_026454
TCONS_00051559 mRNA upstream 6499 31606781 ~ 31618037 (-) False XLOC_026458
TCONS_00051560 mRNA upstream 6804 31607086 ~ 31619463 (-) True XLOC_026458
TCONS_00051561 mRNA upstream 47258 31647540 ~ 31655796 (-) True XLOC_026459
TCONS_00051562 mRNA upstream 105172 31705454 ~ 31716157 (-) False XLOC_026461
TCONS_00051563 mRNA upstream 105977 31706259 ~ 31715714 (-) True XLOC_026461
TCONS_00051529 other downstream 710812 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051520 other downstream 1023376 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051482 other downstream 1641346 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 1642738 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051479 other downstream 1643930 29867404 ~ 29867540 (-) True XLOC_026417
TCONS_00051585 other upstream 585852 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051635 other upstream 1372692 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051656 other upstream 1823910 33424192 ~ 33424328 (-) True XLOC_026505
TCONS_00051678 other upstream 2348387 33948669 ~ 33948788 (-) True XLOC_026513
TCONS_00051702 other upstream 2422883 34023165 ~ 34023613 (-) True XLOC_026529

Expression Profile

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