RNA id: TCONS_00051584


Basic Information

Item Value
RNA id TCONS_00051584
length 355
RNA type mRNA
GC content 0.48
exon number 4
gene id XLOC_026473
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32172534 ~ 32180833 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

actgCATGTCTGAGGCACTCAGTGAGTATATCGTGTCCTAAACATAACTTTAGAGTCTCCACTCTCATTGACAACCTGGTTggttatttaatagttttataatGCTTACtagagTCATGGACACGGACGCGTCTCTCCTCCTCGGTGTTGAACACGAGCAGAAACAACAAGAAGAGCTTTACCAACAACTTCTGCTTCAGACCATGGGCAAATTGCAGAGCGACAGTCCCCCTTCCAAAGTCATCCGTCCACAGCCtgGTCTGTGCGTGAAGACCTCCTCAGTGTCAGACAAAAAGAAGGTCTTTCTAAACATCTGCCAGTCACAGACGGTACCGCCACCTCCTCACTTGTCCCA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006605 protein targeting biological_process
GO:0006364 rRNA processing biological_process
GO:0070286 axonemal dynein complex assembly biological_process
GO:0000492 box C/D snoRNP assembly biological_process
GO:0072594 establishment of protein localization to organelle biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005680 anaphase-promoting complex cellular_component
GO:0097255 R2TP complex cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050309-147 Acts upstream of or within axonemal dynein complex assembly. Predicted to be located in nucleus. Predicted to be part of R2TP complex and ribonucleoprotein complex. Predicted to be active in cytoplasm. Is expressed in Kupffer's vesicle; floor plate; otic vesicle; and pronephric duct. Orthologous to human PIH1D1 (PIH1 domain containing 1).

Ensembl:

ensembl_id ENSDART00000133191

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053055 lncRNA downstream 121468 31876848 ~ 32055378 (-) True XLOC_026466
TCONS_00053056 lncRNA downstream 219480 31935697 ~ 31957366 (-) False XLOC_026469
TCONS_00053058 lncRNA downstream 219484 31951309 ~ 31957362 (-) True XLOC_026469
TCONS_00053057 lncRNA downstream 224333 31951309 ~ 31952513 (-) False XLOC_026469
TCONS_00051575 lncRNA downstream 252260 31922493 ~ 31924586 (-) True XLOC_026468
TCONS_00053059 lncRNA upstream 5103 32185899 ~ 32221962 (-) False XLOC_026474
TCONS_00051586 lncRNA upstream 13956 32194752 ~ 32196043 (-) False XLOC_026474
TCONS_00051588 lncRNA upstream 15396 32196192 ~ 32222085 (-) False XLOC_026474
TCONS_00051587 lncRNA upstream 15396 32196192 ~ 32222085 (-) True XLOC_026474
TCONS_00051591 lncRNA upstream 98286 32279082 ~ 32290059 (-) True XLOC_026475
TCONS_00051578 mRNA downstream 5968 32157140 ~ 32170878 (-) False XLOC_026472
TCONS_00051579 mRNA downstream 5996 32157260 ~ 32170850 (-) False XLOC_026472
TCONS_00051580 mRNA downstream 7092 32157337 ~ 32169754 (-) True XLOC_026472
TCONS_00051577 mRNA downstream 96930 32074806 ~ 32079916 (-) True XLOC_026471
TCONS_00051576 mRNA downstream 105378 32066983 ~ 32071468 (-) True XLOC_026470
TCONS_00051589 mRNA upstream 48105 32228901 ~ 32290096 (-) False XLOC_026475
TCONS_00051590 mRNA upstream 59643 32240439 ~ 32275975 (-) False XLOC_026475
TCONS_00051592 mRNA upstream 113949 32294745 ~ 32320537 (-) False XLOC_026476
TCONS_00051593 mRNA upstream 117707 32298503 ~ 32299892 (-) False XLOC_026476
TCONS_00051594 mRNA upstream 122785 32303581 ~ 32320543 (-) True XLOC_026476
TCONS_00051529 other downstream 1376188 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051520 other downstream 1688752 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051482 other downstream 2306722 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 2308114 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051479 other downstream 2309306 29867404 ~ 29867540 (-) True XLOC_026417
TCONS_00051585 other upstream 5338 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051635 other upstream 792178 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051656 other upstream 1243396 33424192 ~ 33424328 (-) True XLOC_026505
TCONS_00051678 other upstream 1767873 33948669 ~ 33948788 (-) True XLOC_026513
TCONS_00051702 other upstream 1842369 34023165 ~ 34023613 (-) True XLOC_026529

Expression Profile

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