RNA id: XM_036963374.1


Basic Information

Item Value
RNA id XM_036963374.1
length 8579
RNA type mRNA
GC content 0.56
exon number 39
gene id LOC110506740
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 36793286 ~ 36913660 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagtgagagagtgagtgagagagaacgaGTCTGGATTTTAACGACATCTCTAATATTCATGCTGATGCATTTTGCTGCTTTGTGCTGCTTTCATTTTCCACCGCTCTACTGCTGGAGACTCCAGCTCCTCGCCATACACACCCCAGCAcgggagagggagggcagagagggaagaggagaggaaaactAGTGGAAAAAGGAAAACAAccaagcaagctagctagctcaaaacCCTTTTTGTGTACAAAGGAGTAGCCTACCTTACCCTGGGATGTAAGAGAAAGAGGCACGAACGAAGGGAGCAAGGAAAAGGAacgagtagagagagtagagcgaGCGGACGGAGAGAGCACGCGATTGCTGGCGGAGGGGAATCActgagaagagaggagggtagagcgagagagcgacGCTGACACACACCACGACCCGCCTGCCTGAGCCGGACGGAGCTGAAGCACGCAGTAGCAGCAGAATGAAACGAGCTTCCTGGACTGCCACTGCTTCGCACCTCTTCTGGCGCAACCAGCCCTGCTCCCAGCTCTCCCAGTGATCTAACAGCCCAGCCTCATGCACTCCTACTGAGCCTGAACCCTGCCcgctaggggaggagaggagtgtagaggaggtgaaggagaggaggctcCACCGCCTGCCTGTACGCTGCctgtggaggggggagggggtggacACGCAGCTCAAGCAAGACAAACTGTCgaacgagagagtgagagagagagagacaaaaaaccCGGCGAAAGGGCAAGGCTTTTGTTAGGTggttggagagagggggaggaagaaaaaaaatagaaaaaaacatGTCTACAGTGAAGAGGCCAAGAGGAAGGccTCCCAAGAACAAGAATGCTAATGGTCCCAACAGCCACACAGCAGCGCGGGTCCTCAGCCCCCCGATGAAGAGCAGCTCATCCTCCTCGTCTTCGTCCTCCTACAGCTCGTCGTTGGAGAAGCGGGCCCAGCGGAGGCTGGTGAAGGAGCAgatggagcagcagcagcagcaactgaTGGAGGAGGCTGGGGAGGACAAGCAGCAGAAGGCTAACAGGATCATCCATGAGGCCATTGCTAAGGcccgggagagaggagagaagaacatcCCCAGGGTTATGAGTCCAGAGAGCTTCCCCTCTGGGAGCTCCTCggcccacaggagagagagggacagagacagggagagggaccgAGGCAACAAGACCAGGACCAAGGCCTCCAAGAAGGCCCGCATTGTGTCCTCGTCCAAGCCCAAACAGAAGGCCAAGATCGGGAAAATCGTCATTAAATTTGGagggatgaagaagaagagggagacagagtctTCAGAGGAGGGGTCTGATGAAGAGTTTCCGCCTCGAAGATCCTTTAAAGACGATGACTCGACGCGTCGGTCGAACCGCCAGGTGAAGAGGAAGAAGTATGCAGAGGAGGGAGAGGCCAGGGTGTCTGATGAGGAGGTGAAGGTCATGGTTAAAACCAAGAAGACCAGCACTGCTGCAGCACGCAAAGAGCCAGCACAGCAGCTGTTTGTGGAAAACCCCAGTGAGGAGGATGCTGCGGTTGTTGACAAGATCATGTCATCTCGAATAGTCAAGAACGAGGTCGCTCCAGGAGTTATCGTAGAAGTGGAGGAGTTCTTTGTAAAATACAAAAACTACTCCTACCTCCACTGTGAGTGGGCCGTAGAGCAGCAGCTGGAGAAAGACAAGAGGATTCAGCAGAAGATCAAACGTTTCAAGATTAAACAGGCACAGAGAGCCCACTTCTTTGCAGATATGGAGGAGGATCCCTTTAACCCTGACTATGTGGAGGTAGACAGAGTACTGGAGGTGTCCTATTGTGAAGACAAGGACACAGGAGAGCAGGTGGTGTACTACCTGGTGAAGTGGTGCTCTCTGCCCTATGAAGACAGTACATGGGAACTGAAGGGGGATGTGGACCAGAGTAAAATAGAGGAGTTTGAGCTGCTGCAGGCAGCAAGGCCAGACTCCCGCAGGATGGAGCGTCCCCCAGCCAGCCTGTGGAAGAAGAGGGATCAGTCGAGGGAGTACAGGAACAGTAACGTCCTCAGGGACTACCAGCTGGAGGGAGTCAACTGGCTCCTCTTCAACTGGTACAACAGACGGAACTGTATCCTGGCAGATGAGATGGGTCTGGGGAAGACCATCCAGTCCATCACGTTTCTGGAGGAGATCTGGCGTGTGGGCATCAGGGGCCCCTTCCTCATCATCGCCCCCCTCTCCACCATCGCCAACTGGGAGAGGGAGTTCAGAACGTGGACCCACCTCAACGTTATTGTCTACCACGGCTCCATGGTCAGCAGGCAGATGCTGCAGCAGTACGAGATGTACTCCAGAGACACACagGGTCGTGTGGTGCGGGGAGCCTACAAGTTCCACGCCCTCATCACCACCTTTGAGATGATCCTGGGCGGCTGTCCAGAGCTCAACGCCATCGAGTGGCGCTGCGTCATCATCGACGAGGCCCATCGCCTCAAGAACAAGAACTGCAAGCTGCTAGAGGGCTTCAAGCTCATGAATCTGgaACACAAAGCTCTCCTGACAGGGACCCCCCTCCAGAACACAGTAGAGGAGCTGTTCAGTCTGCTGCACTTCCTTGAGCCTCAAAGCTTCCCCTCAGAGAATACCTTCATGCTGGAGTTTGGAGACCTCAAGACTGAGGAGCAGgtccAGAAGTTGCAGGCCATCCTGAAGCCCATGATGCTGCGTCGTCTCAAGGAGGACGTGGAGAAGAAGCTGGCTCCTAAGGAGGAAACCatcattgagGTGGAGCTGACCAACATCCAGAAGAAGTACTACAGAGCCATCCTAGAGAAGAACTTCTCCTTCCTGTCTAAAGGAGTCGGCCAGGCCAACGTCCCCAACCTGGTCAACACCATGATGGAGCTGAGGAAGTGTTGCAACCACCCCTACCTCATTAAAGGTGCTGAGGAGAAGATTTTGGAGGACTTCCGAGAGGTGTACAGCCCTGTTGCCTTTGATTTCCACCTGCAGGCCATGGTGCAGTCGGCTGGTAAACTGGTCCTCATAGACAAGCTGCTGCCCAAGATGAAGGCCGGGGGACACAAGGTCCTCATCTTCTCCCAGATGGTCCGCTGTCTGGATATCCTGGAGGACTACCTCATCCAGAGAAGGTACCTGTATGAGCGTATCGATGGCAGAGTGAGAGGTAACCTGCGTCAGGCAGCTATAGACCGTTTCAGCAAACCAGACTCGGACCGCTTTGTGTTCCTGCTGTGTACCCGGGCTGGAGGTCTGGGCATCAACTTGACTGCTGCTGACACCTGTATTATCTTTGACTCAGACTGGAACCCACAGAACGACCTGCagGCCCAGGCTCGCTGCCATAGGATTGGTCAGAACAAGGCAGTGAAGGTGTACCGTCTGATCACCAGGAACTCTTACGAGCGGGAGATGTTTGACCGGGCCAGCCTCAAACTGGGCCTGGACAAGGCTGTGCTGCAGAGCATGAGTGGCAGGGAGAACAGCTTGCCAGGAGGAGGGccGACCCAGCAGCAGCTGTCTAAGAAGGAGATCGAGGACCTGCTGAGGAAAGGGGCTTATGGAGCTCTGATGGACGATGAGGATGAGGGGGCCAAGTTCTGTGAGGAGGACATCGACCAGATTCTTCAACGCAGGACCAAGACCATCACCATCGAGTCTGAGGGACGGGGATCTACATTTGCCAAGGCCAGTTTTGTGGCATCCGGAAACCGCACAGACATTTCTCTGGACGACCCCAACTTCTGGGACAAGTGGGCCAAGAAGGCTGAGATTGACATGGACACTGCCAATGGCAGAAACAGCCTGGTAATTGACACTCCGAGGGTGAGGAAGCAGACCCGACCCTTCAGTGCCACTAAGGATGAGCTGGCAGAGCTGTCAGAGGGGGAGAGTGACAACGAGGACAAGCCCAAGCTCCGCCGGCCCCACGACCGCCTCAACAGCTACGGCAGGACAGAGTGCTTCAGAGTGGAGAAGAACCTACTAGTATACGGGTGGGGTCGTTGGAAGGATATCCTGCTCCATGGTCGTTTTAAGAAGCAGCTGACAGAGCGTGATGTAGAGTCTATCTGCAGAGCCCTTCTGGCCTACTGTCTGGTTCACTACCGCGGTGACGACAAGATCAAGAGCTTCATGTGGGACCTGATCGCCCCCTCCGAGGACGGACAGACCAAGGAACTACAGAACCACCTGGGTCTGTCGACCCCAGTCCCCAGAGGCAGGAAGGGGAAGAAGATGAAGACTCAATCCAGCACATTTGACATCCAGAAGGCTGAGTGGATCAGGAAGCACAACCCAGAACACATGCTGCAGGACGAGGGATACAAGAAGCACCTCAAACACCACTGCAACAAGGTTTTGCTGCGGGTTAGAATGCTCTACTACCTGAAACAAGAGGTGATGGGAAGCCAGTCACAGAAGATACTAGACGGCGTGGACTCCAGTGAGATCAAGATCTGGGTTCCTGAGCCCGACAGCTCTGAGTTACCAGCCCTGTGGTGGGACAACATCTCTGACAAGTGTCTGCTGTTGGGGGTTTACAAGCACGGTTATGAGAAGTATAACACAGTGCGTGCAGACCCTGCCCTCTGCTTCCTAGAGCGGGTGGGCCGGCCAGACGAGAAGGCCATCGCTGCTGAACAGAGAGCCAATGACTTCATGGATGGGGACGTGGATGACCCAGAATACAAGCCTGCCCCAGCCTTGCTGAAGGACGATATGGAGGATGACGCCTCCTCTCCTGGAGACCTGGTTGTCACAGACAACCCTGGAGagggtgctCCAGTGATGATGGAAGGgttaggtggaggaggaggagatgcagCCTACTGgccctcctcctcagtactaacAGCCAGACTGAGACGTCTGATCACAGCCTCTCAGCGCTACACCAAGTCCAGACAGATCCTCCACATccaccagacccagacccagcacACCACCCATGTCACGCCCTCACTGTGTCCCCTGCCACCCACCCTCAACGACACTATCAACCCCAAGATGGCCGCCAAGATAGAACGCCAGCAGAGatGGACAAGGCGAGAGGAAGCTGATTTTTACCGTGTGGTGTCTACCTTTGGTGTGGTGTTTGACCCAGACCTGGGCCGTTTCGACTGGACCAAGTTCAGAGCCATGGCTCGGCTGCACAAGAAGACAGACGAGAGTCTGCAGAAGTACCTGTGGGCCTTCACTGCCATGTGCAGGAGAGTGTGTCGCCTGCCACCAAGAGAAGGagacaCAGCGGTGGACCCCTCTCTGTCCATTCAGCCCATCACAGAGGAGCGTGCATCTCGTACCCTCTACAGAGTAGAGCTGCTACGCCAGGTCAGGGAACAGGTCCTGCGCCACCCCTTGCTCTATGAGCGCCTGCCCTTGTGCCAGCTGGGCTCGGACCTGCCCGTGTGGTGGGAGACCAGTACCCACGACCGAGACCTCCTAATTGGGGCCGCCAAGCACGGCGTCAGCCGCACAGACTACCACATCCTCCGAGACCCAGAGCTCTGCTTCATGGCTGCCCAGCGCAACTACAGCCAGAATAAAGGAGTCCAACTGCCATCCCAGACCCCTACTCCGCTCCTGAATCCCCAGTACCAGGCTAGTAGAGACCCAGCCTTGGCAGAGTGCCCTGTGCCTgcccagagggagagggaggacatcCCGGGGGCAGTGCCCAAAGAAGAACCTTTCTCGGAGGGGGAGGAGTGCATGGAGAGAGGGGatcaggtggagaggtggagtccCCAGCCTGCCCCTCTCACCCCTACAGGGATAGAGGAGAAGCCTGACCTGGGGGTGGTGAAAGTAGAGAACGAGAGCCACATGGTGGCGGCACGGACCAAGCCACTCACACCCAACTCAGCCGCCAGGAAAGAGAAGAAAGCCAATAAAAGAAGTCGAAGAGAGGCCAGACGAGCCGCCTCCGCAGCATCAGACTCCGACTCGGATGgctcctcctccagctcttcaTCACGATCTTCTTCATCATCGTCATCgtcgtcctcttcctcctcacgcTCCGGATCCAGCTCCTCTTCATCTTCATCCTGCTCATCAggctcctcatcttcctcttcctcatcttcatcttcctctgttaacagtgagagtgagggagaggaaggaaagacCAAGGTTCCGACAGTGGCCATCGTGAAAGGATTTGACGAAGACAGTGTGGcgtctctcagcaccactcaggATGAGATGCAGGACAGTCACGTGACAGAGAACGGCAGCAACAACTCACACCACCACCCCTTCCAGGGAGGATACATGCTGGCTGCATCCTACTGGCccaagGACCGTGTGATGATCAACCGTCTGGACAGTATCTGCCAAGCAGTGCTGAAGGGGAAATGGCCGGGGACCCGGCGGTCGTACGAGGCAGGAGGGGCCGTAGCCTCCTTCTACACCACCAAGCTGCTGGACAATGCAGCTGCGGCCAACAACAGCAGCAACCTCTGCTCAGCTTCCGCCTTGGCCTCAGAGGACCCCTCGGCCTCCCCTCAGGGTTCAAAGGTGAAGAAGCATGTTGCAGGAGAAAAGGAGTTCTCAGTGAAAATGAATGAAcaggAGGGGGGTCTGAAGCTGACCTTCCAGAAGCAGGGTCCCGGCCAGCCCCTGAAAAGGCCCTTGGAGCCTGAGGAGGGGCCCCTTAGCCAGCAGCAGTACCTTACAAGGCTCCATGAGCTCCAGAGTGCCTCAGACACCAGTCTGGCTGACTTCACCAAGCCCCAGGCTGCCAGCTTCCCACAGGCCTCTACAGGTCTGGCGGGTCAGATGAAGCTGAACGGAGGTATGGATGGCCAGCCggtggtgaagaggaggagaggaaggaggaagaatgTGGAGGGGATGGACCTGCTCTTTATGAACAGGAAAAGAGGACCAGCCGTGCCTGAAAGCGTGCCCCCGGCGTGGGGTGGTATGAGTCAGGCTGGCACTGGGCTGTCTATTGCCTCAGGGCAGGGTAGCCCCCTAGGGGCCCAGGGCCCTATGGACACAGAGAGCAGAGTCTCTGTCATCAACCTGAAAGATGGGACCCGTCTGGCCGGAGACGATGCCCCCAGGAGGAGGGAGCTGGAGCTGTGGCTCAAAGAACACCCAGGCTTTGTGGCTGACACAGGGGCCTTCATCCCTggAGTGAATAAGAGGCAGCTGGAGCAGTTCCAGCAGGATGGTAGACCCAAGCAGAAGAGGCATCGCTGCAGGAACCCCAACAAGATCGATGTCAACAgtctgacaggagaggagagggtccaGATCATCAACAGGAGAAATGCACGcaagGTTGGTGGGGCCTTCGCCCCCCCTCTAAAGGACCTGTGTCGGTTCCTTCAGGAGAACCCAGAGTACGGGGTTCCACCAGAGTGGGCCGACGTCGTCAAGCAGTCGGGCTACCTCCCAGAGAGCATGTTTGACCGGATCCTGACAGGACCCATCGTACCAGAGGAGGTGAGTCGGCGTGGACGGAGGCccaagagcgccctggccaaggCTGCAGCTACAGCCAACCAGGGGGACCCATCCCTGGGCCTCAACCCCCTGCTGGCCAACGGCCTCCTCTCTGGCatggatctatctagtctacaGGCCTTCCAGCAGAACCTCCAAAGTCTCCAGTCACTGCAGCTCACTGCCGGCCTCATGGGCCTGCCCACCGATGCTAACAACCTGGCCGCCATGTTTCCCATGATGCTCTCTGGCATGGCTGGGCTTCCCAACCTCCTGAGCATGGGGGGTCTGCTGGGGAAGCCCCCACAGGACGCCACGGGGGGAGCTgagcagaggaagaggaagaagggaagcagagaaggaggaggaggggagcccTCGTCTGCCTCCTCCaatgccccctcctcctcccactcccaCGGCCTCTCCCACACCACGGACACCAAAGGTGAAAGGACAGAAGGTCAAAGCAGGGACGTGGACGGCCACGTCCCCAGTGTCCATTCCCCCTCCAGTTCCTctgccaccacctccaccaccaccccactaAGTGCTTCTGCTGCCCAGGCAGCCTCCAGTCACCCTCTGTCTCTTAACCCCTTGTTTCTCTCCAGTATGCTTTACCCAGGGATGCTTCTCACTCCAGGCCTTAACCTTCCTGTGTCCACCACACAGCCACCACACAGTGACTCAAACAGTGACCACAAACCCCACAAGCCCACTAAGACCTCTAAGACCGCCCCCTCAAAACCTCTGTCGCCAAGGAGAACACCGGAGTGTCAGGAAGAGGAGGGTCTTAGTGACAAGAGGGAGGAGTCAGGGGAACACAAGGAGGAGAACAGTGGTCCAGAAGGCTCGGGGAAGGCGGAGTCATCTTCTTCATCAGAGTCTGGGAGCTCTTCTTCATCATCTGATGGGTCATCAGACTCCAGTGATGAAGACTGAACCTaatgaatatataaatatatttatgtaTCTATTAGAaatgtacacacatacagtaccagccaaaagtttggacacacctactcattcaagggttttactattttctgcattgtagaataatagtgaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2317541 lncRNA downstream 54567 36714156 ~ 36738719 (-) True G2026387
TU2317336 lncRNA downstream 128239 36664704 ~ 36665047 (-) True G2026216
TU2317332 lncRNA downstream 130817 36661814 ~ 36662469 (-) True G2026212
TU2317326 lncRNA downstream 135970 36657046 ~ 36657316 (-) True G2026206
TU2317325 lncRNA downstream 136245 36656710 ~ 36657041 (-) True G2026205
TU2317653 lncRNA upstream 48502 36924644 ~ 36924944 (-) True G2026474
TU2317685 lncRNA upstream 76569 36952711 ~ 36952985 (-) True G2026505
TU2317727 lncRNA upstream 119746 36995888 ~ 36996140 (-) True G2026547
TU2317915 lncRNA upstream 158591 37034733 ~ 37035334 (-) True G2026712
TU2317951 lncRNA upstream 206811 37082953 ~ 37085315 (-) True G2026744
XM_036963797.1 mRNA downstream 9321 36770889 ~ 36783965 (-) True LOC110511520
XM_021586571.2 mRNA downstream 229028 36499890 ~ 36564258 (-) True LOC110506738
XM_021586570.2 mRNA downstream 633755 36144492 ~ 36159531 (-) True LOC110506737
XM_021586567.2 mRNA downstream 812336 35978091 ~ 35980950 (-) False LOC110506734
XM_036964254.1 mRNA downstream 812336 35978091 ~ 35980950 (-) True LOC110506734
XM_021586582.2 mRNA upstream 38632 36914774 ~ 36923463 (-) False LOC110506741
XM_021586575.2 mRNA upstream 38632 36914774 ~ 36923466 (-) False LOC110506741
XM_021586574.2 mRNA upstream 38632 36914774 ~ 36923480 (-) False LOC110506741
XM_021586576.2 mRNA upstream 38632 36914774 ~ 36923480 (-) False LOC110506741
XM_021586577.2 mRNA upstream 38632 36914774 ~ 36923480 (-) False LOC110506741
TU2316868 other downstream 449852 36343156 ~ 36343434 (-) True G2025757
TU2316067 other downstream 1244529 35548260 ~ 35548757 (-) True LOC110506721
TU2316121 other downstream 1295483 35495787 ~ 35497803 (-) True G2025061
TU2316001 other downstream 1393319 35396074 ~ 35399967 (-) True G2024949
TU2315702 other downstream 1864905 34876422 ~ 34928381 (-) True G2024673
TU2318224 other upstream 544269 37420411 ~ 37421037 (-) True G2026993
TU2318287 other upstream 614710 37490852 ~ 37491416 (-) True G2027052
TU2319582 other upstream 1461711 38337853 ~ 38348356 (-) True LOC110506753
TU2319612 other upstream 1604460 38480602 ~ 38504135 (-) True LOC110506757
TU2320352 other upstream 2350221 39226363 ~ 39227059 (-) True G2028777

Expression Profile