RNA id: TU2319460


Basic Information

Item Value
RNA id TU2319460
length 593
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G2028017
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 38102675 ~ 38103673 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGACAATTCTTCAGAAAAGTATTTTTGGGTCCATAGTCAACTAagagacttacacagaaagaAGAGAGTAGAAAACAAACTACACAGAGCTAACTAATGCCCCTGACTGTGGGAAAAGAAGAGAGTAAAAAACAAAACTACACAGAGCTAACTAATGCCCCTGACTGTGGGAAAAGAAGAGTAAAAAACAAACTACACAGAGCTAACTAATGCCCCTGACTGTGGGAAAAGAAGAGTAAAAAACAAAACTACACAGAGCTAACTAATGCCCCTGACTGTGGGAAAAGAAGAGAGTAAAAAACAAACTACACAGAGCTAACTAATGCCCCTGACTGTGGGAAAAGAAGAGAGTAAAAAACAAACTACACAGAGCTAACTAATGTCCCTGACTGTGGGAAAAGAAGAGAGTAAAAAACAAACTACACAGAGCTAACTAATGCCCCTGACTGTGGGAAAAGAAGAGAGTAAAAAACAAACTACACAGAGCTAACTAATGCCCCTGACTGTGGGAAAAGAAGAGCAATTAATAAGGTATCAATGGTATCAACATCATAGCTATCCAATAGGTAAAAACTCTCAGTTATGTATTTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2319390 lncRNA downstream 17069 38084524 ~ 38085606 (-) True G2027967
TU2318765 lncRNA downstream 138805 37963628 ~ 37963870 (-) True G2027461
TU2318755 lncRNA downstream 148919 37953553 ~ 37953756 (-) True G2027451
TU2318751 lncRNA downstream 151798 37950664 ~ 37950877 (-) True G2027447
TU2318750 lncRNA downstream 153004 37949459 ~ 37949671 (-) True G2027446
TU2319469 lncRNA upstream 11209 38114882 ~ 38115272 (-) True G2028022
TU2319475 lncRNA upstream 18436 38122109 ~ 38122662 (-) True G2028027
TU2319482 lncRNA upstream 23410 38127083 ~ 38128660 (-) True LOC110506750
TU2319539 lncRNA upstream 115223 38218896 ~ 38219802 (-) True G2028084
TU2319544 lncRNA upstream 123126 38226799 ~ 38227189 (-) True G2028088
XR_002471028.2 mRNA downstream 43653 38056139 ~ 38059022 (-) True LOC110506749
XR_005039854.1 mRNA downstream 301939 37799397 ~ 37800736 (-) False LOC118944515
XR_005039855.1 mRNA downstream 301970 37799397 ~ 37800705 (-) False LOC118944515
XR_005039856.1 mRNA downstream 301970 37799397 ~ 37800705 (-) False LOC118944515
XR_005039857.1 mRNA downstream 302013 37799397 ~ 37800662 (-) False LOC118944515
XM_021586593.2 mRNA upstream 22416 38126089 ~ 38222653 (-) False LOC110506750
XM_021586600.2 mRNA upstream 196960 38300633 ~ 38321565 (-) False LOC110506754
XM_036963304.1 mRNA upstream 196960 38300633 ~ 38333271 (-) True LOC110506754
XM_021586599.2 mRNA upstream 232278 38335951 ~ 38348233 (-) False LOC110506753
XM_021586598.2 mRNA upstream 232278 38335951 ~ 38348500 (-) False LOC110506753
TU2318287 other downstream 611259 37490852 ~ 37491416 (-) True G2027052
TU2318224 other downstream 681638 37420411 ~ 37421037 (-) True G2026993
TU2317552 other downstream 1226572 36834733 ~ 36876103 (-) False LOC110506740
TU2317556 other downstream 1226679 36834733 ~ 36875996 (-) True LOC110506740
TU2316868 other downstream 1759241 36343156 ~ 36343434 (-) True G2025757
TU2319582 other upstream 234180 38337853 ~ 38348356 (-) True LOC110506753
TU2319612 other upstream 376929 38480602 ~ 38504135 (-) True LOC110506757
TU2320352 other upstream 1122690 39226363 ~ 39227059 (-) True G2028777
TU2320355 other upstream 1125456 39229129 ~ 39230810 (-) False G2028779
TU2320356 other upstream 1125456 39229129 ~ 39230514 (-) False G2028779

Expression Profile