RNA id: TU2322055


Basic Information

Item Value
RNA id TU2322055
length 503
lncRNA type inter_gene
GC content 0.33
exon number 4
gene id G2030164
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 40910765 ~ 40911861 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttaggtacattgatgtttatggttaggtacattggtgtttatggttaggtacattgatgtttatggttaggtacattggtgtttatggttaggtacattgatgtttatggttaggtacattgatgtttatggttaggtacattggtgtttatggttaggtacattgatgtttatggttaggtacattggtgtttatggttaggtaccgtgatgtttatggttaggtaccgtgatgtttatggttaggtaccgtgatgtttatggttaggtaccgtgatgtttatggttaggtacattggtgtttatggttaggtacattgatgtttattgttaggtacattgatgtttattgttaggtacattgatgtttatggttaggtatattgatgtttatggttaggtacattgatgtttatggttaggtacattgatgtttattgttaggtatattgatgtttatggttaggtatattgatgtttatggttaggtacattgatgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2322051 lncRNA downstream 11207 40899109 ~ 40899558 (-) True G2030163
TU2322049 lncRNA downstream 12667 40897280 ~ 40898098 (-) True G2030161
TU2322041 lncRNA downstream 23812 40886635 ~ 40886953 (-) True G2030154
TU2322040 lncRNA downstream 25683 40884731 ~ 40885082 (-) True G2030153
TU2322039 lncRNA downstream 26693 40883733 ~ 40884072 (-) True G2030152
TU2322057 lncRNA upstream 1204 40913065 ~ 40913400 (-) True G2030166
TU2322058 lncRNA upstream 3339 40915200 ~ 40915415 (-) True G2030167
TU2322061 lncRNA upstream 9507 40921368 ~ 40921605 (-) True G2030170
TU2322073 lncRNA upstream 30611 40942472 ~ 40942688 (-) True G2030182
TU2322086 lncRNA upstream 75564 40987425 ~ 40987911 (-) True G2030195
XM_036963625.1 mRNA downstream 38090 40871432 ~ 40872675 (-) False LOC118944423
XM_036963288.1 mRNA downstream 78473 40804103 ~ 40832292 (-) True LOC110519157
XM_036963880.1 mRNA downstream 174539 40680421 ~ 40736226 (-) True LOC110506139
XM_036963537.1 mRNA downstream 242923 40663518 ~ 40667842 (-) True dut
XM_036963536.1 mRNA downstream 244013 40663518 ~ 40666752 (-) False dut
XM_036964529.1 mRNA upstream 26169 40938030 ~ 40983366 (-) False LOC110519559
XM_036964532.1 mRNA upstream 26169 40938030 ~ 40983646 (-) False LOC110519559
XM_036964531.1 mRNA upstream 26169 40938030 ~ 40983647 (-) False LOC110519559
XM_036964528.1 mRNA upstream 26169 40938030 ~ 40983649 (-) False LOC110519559
XM_036964530.1 mRNA upstream 26169 40938030 ~ 40983650 (-) True LOC110519559
TU2322043 other downstream 3572 40906623 ~ 40907193 (-) True G2030156
TU2322050 other downstream 11744 40898470 ~ 40899021 (-) True G2030162
TU2322044 other downstream 22081 40887603 ~ 40888684 (-) True G2030157
TU2321988 other downstream 131777 40775714 ~ 40778988 (-) True G2030106
TU2321690 other downstream 343253 40551179 ~ 40567512 (-) False G2029858
TU2322188 other upstream 299616 41211477 ~ 41211852 (-) True G2030291
TU2322603 other upstream 549996 41461857 ~ 41463190 (-) False LOC110515873
TU2322609 other upstream 630219 41542080 ~ 41567913 (-) True LOC110515873
TU2323116 other upstream 1235499 42147360 ~ 42148871 (-) True LOC110506841
TU2323163 other upstream 1304578 42216439 ~ 42217465 (-) True LOC118944568

Expression Profile