RNA id: TU2323428


Basic Information

Item Value
RNA id TU2323428
length 1461
lncRNA type intronic
GC content 0.47
exon number 1
gene id G2031281
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 42417395 ~ 42418855 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcccacagcaccaccagggttcagccacctcccaccatcatcattaactctctctcccacagcagcACCAGGGTTCAGCCACCTCTCACCatcattaactctctctcccacagcaccaccagggttcagccacctcccaccatcatcattaactctctctcccacagcagcACCAGGGTTCAGCCACCTCTCACCatcattaactctctctcccacagcaccaccagggttcagccacctcccaccatcatcattaactctctttcccacagcaccaccagggttcagccacctcccaccatcatcattaactctctctcccacagcaccaCCAGGGTTCAGCCACCTCCCACCACCCATGACTGTAACACACAACTATTCTCAAATGTAAGAACTGAGTGTATTTGTACGTGTGTGTACCCATGCGGATGTGTAGTGGATATGTTTTCCCAATGCCCTAGAAACGCTAATTCAGTCAAAATaaacaacgtgtgtgtgtgtgtgccagctaCCTACCTTATTTAACCTTAGGTTTATACAGGtaggtcaattaagaacaaattcgtatttacaatgaagaCCTGTCTGCAGTGGCAGAGATGGAAGCAGTACAGGGCCTTAGGTTCCATAGCCTTTTTATACCATTCAGCCTATGACTGCTTATCAAACACATGATACTGCTGATAAAGGACCTTGTCTGTCAAAACGTTCCTCCTATAATCAATAGAATGGAGCCAAACATATTGTAAACATGTGTTTGGTACCCCTCTATTcctgccattacaatgagcccgtcctcctaaagctccccccaccagcctcctctgctgtaCAGTTCCCTTCGTTCTTTagtcatgtttatttatttgaatgaCTGCGGTGCTCCATCTGGATATGTGTGGAGATACTCTCTTTTCAATGTGTATGACTGTTAGCACAACTGTATGTCTTGAGCAGCCACTGCCAGCCAGTCTACTCCCTGTCTGTCCTTATTAAACCGTCTACATTCACCTCAAGGATGCTCCGACGATAACccgagaccacacacacacacacttaatttgACTCGTTACACCCACATGCACACTGGTTATGCGCACACAAACAAGCACATACACAGGATATCTGTACTTCATCCTCTCCCTGGctgacacacacagtcactctgactCATCAAAGGCTTTAGTGTGTTTTCTCAGAAATGCCTCCTCAGAAATGGttggaacccccccccctctataaagGCTTCCTGGTACTGATTTGTTTAGtgctaactaactactgttagtCCATCTGTAAGGAGAGTTGCACAAGTCAAGTGGGTCTGATTTGTCATTTGAGAAACAGCACATGAGTACGTTCCTAATGGTACTTTATTTCCTACATATGGCTCTGGTAAGAAATGGTGCACTATGGGCCCAATAAAtagaatagggtcccatttggggcGACACTCATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2323427 lncRNA downstream 555 42416546 ~ 42416840 (-) True G2031280
TU2323426 lncRNA downstream 2798 42414288 ~ 42414597 (-) True G2031279
TU2323420 lncRNA downstream 16320 42400730 ~ 42401075 (-) True G2031273
TU2323417 lncRNA downstream 18381 42397789 ~ 42399014 (-) True G2031271
TU2323415 lncRNA downstream 18445 42397789 ~ 42398950 (-) False G2031271
TU2323356 lncRNA upstream 37990 42456845 ~ 42457920 (-) True G2031227
TU2323455 lncRNA upstream 39304 42458159 ~ 42458511 (-) True G2031306
TU2323456 lncRNA upstream 39712 42458567 ~ 42458791 (-) True G2031307
TU2323434 lncRNA upstream 43121 42461976 ~ 42462363 (-) True G2031287
TU2323459 lncRNA upstream 51814 42470669 ~ 42487634 (-) True G2031309
XM_036964584.1 mRNA downstream 199893 42214901 ~ 42217502 (-) False LOC118944568
XM_021586700.2 mRNA downstream 268529 42147764 ~ 42148866 (-) False LOC110506841
XM_036963913.1 mRNA downstream 279391 42118421 ~ 42138004 (-) True LOC118944459
XM_036963914.1 mRNA downstream 346923 42067732 ~ 42070472 (-) True LOC110506147
XM_036963905.1 mRNA downstream 360827 41986285 ~ 42056568 (-) True LOC110506148
XM_036963237.1 mRNA upstream 43726 42462581 ~ 42502104 (-) False LOC110506162
XM_036963238.1 mRNA upstream 43726 42462581 ~ 42509613 (-) True LOC110506162
XM_036963722.1 mRNA upstream 93425 42512280 ~ 42516373 (-) True LOC110506854
XM_021607810.2 mRNA upstream 105726 42524581 ~ 42526465 (-) False LOC110526670
XM_021607811.2 mRNA upstream 105728 42524583 ~ 42526465 (-) True LOC110526670
TU2323389 other downstream 47486 42368254 ~ 42369909 (-) True G2031259
TU2323351 other downstream 70670 42343282 ~ 42346725 (-) False G2031225
TU2323352 other downstream 70670 42343282 ~ 42346725 (-) False G2031225
TU2323354 other downstream 70670 42343282 ~ 42346725 (-) True G2031225
TU2323163 other downstream 199930 42216439 ~ 42217465 (-) True LOC118944568
TU2323433 other upstream 40402 42459257 ~ 42461315 (-) True G2031286
TU2323493 other upstream 138942 42557797 ~ 42558903 (-) True G2031343
TU2323769 other upstream 197389 42616244 ~ 42621546 (-) True LOC110513924
TU2324292 other upstream 765781 43184636 ~ 43185724 (-) True G2031974
TU2324286 other upstream 772843 43191698 ~ 43197828 (-) True LOC110506858

Expression Profile