RNA id: TCONS_00005160


Basic Information

Item Value
RNA id TCONS_00005160
length 3192
RNA type mRNA
GC content 0.48
exon number 16
gene id XLOC_002789
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 25402463 ~ 25570647 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATATCAGCACAAAATCTTACCTGAAATACCTTGAAGATTCCTTCACGTTTGGATTTCCCCGGAATGGATGATAACGTGTTGTTTTTGAGGCAATAACTGGCTTTTACGTGGAGCTGTTTCCCTTCGCGCAATGGGAGGTGAATGGAAGTTGATGAGCGCGCGGTATGGTTCCTTAAATCCAGTTTTATGACATGAAGTTTTTGCTTTTAACCTCTTTTGATAGCAGAGCTATGGAGAAGCGCAAAAgactgttatttttctttttttactcgaTGGCAAAGTTTTACCTTAGTGAACAGCAGGTCATACGAATTGGAGGCATCTTTGAGACACGGGAAAATGAACCTGTCAGTATGGATGAACTCGCCTTTAAATTTGCTGTTACAAGTATCAATCGAAACAGAACTTTGATGCCAAACACCACGTTGACCTACGACATCCAGAGAGTAAACCTCTTTGACAGCTTTGAAGCCTCCAGAAGGGTGTGTGACCAGTTGGCCCTGGGGGTTGCGGCAGTCTTCGGCCCTTCTCACAGCTCCTCGGTCAGTGCCGTTCAATCCATTTGCAATGCCCTAGAGGTGCCGCACATCCAGACACGCTGGAAACACCCGTCTGTGGACAATAAAGACAATTTTTACATTAACCTCTACCCCGAGTACACCTCCATAAGCAGGGCTATCCTGGACATTGTCATTTTCTACAAATGGAAGTGCGTTactgtggtttatgaggacagcACAGGTTTAATGCGTATGCAGGAACTGATCAAAGCTCCATCTAAAAACAACTTGAAGATCCGTATCCGCCAGCTGCCGTCGGGAGGAGGCGACAGTCGCCCCCTTCTGAAGGAGATGAAGAAAGAGAAGGAGTTTTACGTCATCTTCGACTGCTCCTACCAAGTAGCCGCCGAGCTTCTCAAACAGCTGATGTCAATGGGCATGATGACGGAGTACTATCATTTCTTCTTCACTACATTGGATCTATTTGCTTTGGATCTTGAGCCGTACCGCTACAGTGGAGTCAACATGACTGCCTTCCGTCTCCTGAATCTTGATGATTCGTATGTGGCTTCTGTGATCCAGAAGTGGTCTATGGAACGCCAGCTGGCACCCCCTAAACCTGAGAGCGGATTGATGAGCGGCATCATGACTACAGCGGCTGCGCTCATGTATGACGCAGTGTTCATGGTTGCTGTGGCGTCTCAGCGGGCCACACAGATGACAGTGAGCTCCCTGCAGTGCCACAGACACAAACCCTGGAGGTACGGCCCGCGCTTCATGAACTTGTTTAAGGAGGCCCAGTGGGATGGTTTGACAGGACGGATAGTGCTTAACAAGACTGATGGGCTGCGGAAAGAGTTCAACTTAGACCTCATCAGCCTGAAGGAGGACGGGACGGCCAAGATTGGAGTGTGGAACTCGTACACAGGCCTCAACCTGACTGAGataaaagacaataaaaacaTCACAGATTCTCTGGCCAACAGGACCCTTATCGTCACCACcattctggagaacccgTATGTTATGTATAAGAAGTCAGACAAGGTGTTATATGGGAATGACCGCTTTGAGGGCTACTGTCTGGACCTGCTGAAGGAGCTCTCTAACATCCTGGGATTCACTTACGAAGTCAAGCTGGTTACTGATGGCAAATATGGGGCTCAGAATGACAAAGGCGAGTGGAATGGCATGGTTCGGGAGCTGATCGACCACATAGCTGACCTGGCCGTCGCTCCCCTGACCATCACTTATGTCAGAGAGAAGGTTATTGACTTCTCCAAACCCTTCATGACCCTGGGGATCAGCATACTGTACCGCAAACCAAACGGCACCAATCCAGGGGTGTTTTCCTTCCTCAACCCCCTCACCCCAGATATTTGGATGTACGTGCTGTTGGCCTGTCTGGGAGTGAGCTGCGTGCTGTTTGTGATTGCCAGGTTCACACCATATGAATGGTACAACCCTCACCCCTGCAACCCTTCATCTGAAGTGGTCGAAAACAACTTCACGCTGCTGAATAGTTTATGGTTCGGTGTTGCGGCTCTAATGCGTCAAGGATCTGAGCTGATGCCCAAAGCTTTGTCCACCAGAATTTTGGGAGGGATTTGGTGGTTCTTCACTTTAATCATCATATCTTCCTACACAGCCAACCTGGCCGCGTTCCTCACAGTGGAGAGAATGGACTCCCCAATCGATTCGGCCGATGATTTGGCCAAGCAGACTAGAATTGAATATGGAGCAGTGAGAGATGGCTCTACAATGACTTTCTTTAAGaAATCAAAAATCTCAACGTACGAGAAGATGTGGGCATTCATGAGCAGCAGGAAGAACACAGCCCTGGTGAAGAACAGCAAGGATGGCATTACGAGAGTCCTGACCACCGACTACGCTCTCCTGATGGAGTCCACCAGCATCGAGTACATCACCCAGAGAAACTGCAACCTCACACAGGTCGGAGGCCTGATCGACTCTAAGGGCTATGGAGTTGGCACACCAATAGGCTCACCATACCGGGACAAGGTGACCATCGCCATCCTGCAGCTCCAGGAAGAGGGAAAATTGCACATGATGAAGGAGAAATGGTGGCGAGGAAACGGCTGTCCAGAAGAGGACAGCAAAGAGGCCAGTGCCCTGGGTGTGGAGAACATCGGGGGCATCTTTATCGTCCTGGCAGCCGGACTCGTGCTGTCTGTGTTCGTGGCCATCGGAGAGTTCATCTACAAATCACACAAAAACAGCGATATTGAAGAGTGTGTCTCTTTCAGTGCTGTGATGGAAGACCTGGGCATATCCCTCAGGTGCCACAAGGCGTTGAGGAAGAGAGGCAGACACAGAGGAAGAGCAGGCCTGTCTGGAGTCTTATGTAACCCCAAACGCATCCCGAGGAAAGAGACAATGGCCTAGATCCTCCTCCAACCGCCACGCAACCTGCGGGTGAAATCAGTCTCTGAGGCTGTGTGTTTTTCATTCAATCTCTGTGCTTTTTATTCATGAATTTGCAGGCTTTTATATGAGTggattgtggtaatttcacatAGACCTTGGTAATATCTTGAGCCGATGGAACTGGAGACGAAAGGAAtaatttattttgagatattaattaACGTACGAGCACATGGCGTAATTTGGTAGCATTTTATTGTGCTGTCCTTGATTTCATAAATAAAAGCATACATATTTTACACAC

Function

GO:

id name namespace
GO:0035249 synaptic transmission, glutamatergic biological_process
GO:0006811 ion transport biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0015276 ligand-gated ion channel activity molecular_function
GO:1904315 transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential molecular_function
GO:0005216 ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function
GO:0008066 glutamate receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6502 Predicted to enable glutamate receptor activity and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within ion transport. Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be active in postsynaptic membrane. Human ortholog(s) of this gene implicated in childhood absence epilepsy. Orthologous to human GRIK1 (glutamate ionotropic receptor kainate type subunit 1).

Ensembl:

ensembl_id ENSDART00000147089

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006050 lncRNA downstream 12350 25380998 ~ 25390673 (-) True XLOC_002788
TCONS_00006049 lncRNA downstream 66839 25329582 ~ 25336184 (-) False XLOC_002787
TCONS_00005762 lncRNA downstream 66839 25330599 ~ 25336184 (-) True XLOC_002787
TCONS_00005760 lncRNA downstream 68791 25329582 ~ 25334232 (-) False XLOC_002787
TCONS_00005168 lncRNA upstream 12806 25574557 ~ 25575573 (-) False XLOC_002791
TCONS_00005763 lncRNA upstream 125150 25686901 ~ 25687218 (-) True XLOC_002792
TCONS_00005764 lncRNA upstream 129121 25690872 ~ 25691670 (-) True XLOC_002793
TCONS_00005171 lncRNA upstream 135408 25697159 ~ 25699359 (-) False XLOC_002794
TCONS_00006054 lncRNA upstream 570718 26132469 ~ 26142597 (-) False XLOC_002799
TCONS_00005157 mRNA downstream 59502 25325808 ~ 25343521 (-) False XLOC_002787
TCONS_00005158 mRNA downstream 59502 25328662 ~ 25343521 (-) False XLOC_002787
TCONS_00005156 mRNA downstream 74209 25312337 ~ 25328814 (-) False XLOC_002787
TCONS_00005155 mRNA downstream 185676 25214270 ~ 25217347 (-) True XLOC_002786
TCONS_00005154 mRNA downstream 198989 25108853 ~ 25204034 (-) True XLOC_002785
TCONS_00005166 mRNA upstream 10621 25572372 ~ 25657506 (-) False XLOC_002791
TCONS_00005167 mRNA upstream 11018 25572769 ~ 25628555 (-) False XLOC_002791
TCONS_00005169 mRNA upstream 20190 25581941 ~ 25591194 (-) True XLOC_002791
TCONS_00005170 mRNA upstream 132644 25694395 ~ 25699454 (-) False XLOC_002794
TCONS_00005172 mRNA upstream 135885 25697636 ~ 25716953 (-) False XLOC_002794
TCONS_00005133 other downstream 947291 24455616 ~ 24455732 (-) True XLOC_002771
TCONS_00005130 other downstream 1019642 24383266 ~ 24383381 (-) True XLOC_002768
TCONS_00005129 other downstream 1023247 24377417 ~ 24379776 (-) True XLOC_002767
TCONS_00005104 other downstream 2571594 22828366 ~ 22831429 (-) True XLOC_002753
TCONS_00005097 other downstream 2650675 22752232 ~ 22752348 (-) True XLOC_002751
TCONS_00005183 other upstream 570718 26132469 ~ 26141081 (-) False XLOC_002799
TCONS_00005187 other upstream 634533 26196284 ~ 26202523 (-) False XLOC_002800
TCONS_00005203 other upstream 1181845 26743596 ~ 26744131 (-) True XLOC_002804
TCONS_00005214 other upstream 1444520 27006271 ~ 27009124 (-) False XLOC_002814
TCONS_00005218 other upstream 1608205 27169956 ~ 27170072 (-) True XLOC_002817

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_11706322_11747949.mRNA True 2914 mRNA 0.48 16 CI01000304 11706215 ~ 11747949 (-)