RNA id: TCONS_00005167


Basic Information

Item Value
RNA id TCONS_00005167
length 6328
RNA type mRNA
GC content 0.47
exon number 25
gene id XLOC_002791
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 25572372 ~ 25657506 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTGTCTGTAGCTATCTAAACTATTCTTGTGTATAGACTTAATCTTTCCCTgttcttttgtttaaaatgtgttgtgcttcttttttttcaggGAAAACTGCTGCAGGGCTGATCATGACCATGAGGTCAACAATTAGGAACATGGCCGTCTGGAAGTGCATCTAATCCACTGCTTCGGCCTCAGACGGTTAACCATGGGAAACGTGGAGAGCCAAAATGGAGATCTTGCGTACTACAGTCAGGGACATGGCCACATCTCACGAAAGCACATGACCCGATCACTTCGCATATCTAACAAACAGTCTCGACGATCACGCCATGCCTCGACTAGCAAGGTTGAACACCGCAACTCTGAGTCCAGCACAAAGTCCAGCAGCACTCCTTCCATCCCACAATCCCTAAGTGAAAATGGCCTAGAACCGTTTAGCGAGAAAAATGCTTTGGAGAGCTATGGGGGAACCATTTGGGTGGACCGAATGGCAATGAACTTGCGGCCAATGTCCTTCCATGATAACATTGGTGATCCCACCATTACGCCAGGTTCAGAAGATGGAGTGGAGATGGACACAGTGGTGCCAGATGGTTGTGATGATGATGGACTTTTCACAGGTGAGGACACGTACCTGCAGAGGACCAGAGATGGTCCTCGGGAAGGTGGCAGCTTCAAGAAGAAGCGCTCCAAATCTGCTGACATGTGGAGAGATGATTCCATGGAGTTCTCGTTGTCAGACCTTAGCCAAGAACATCTGACAAGCACAGAGGAAATTATAGGGACAAATGAGGATGAAGACAAAGGCTTTGCAAACTGTGGAGGACGCCGTCGTACCTCCAGCCCAAGGACACTGGAGTCTCATTCAGGAGAGAGAGCCAACTCTTTAGATGAACTTTGCACACAGAGGCTACCTCCTCTTCGTGGCTCGCACCATCTTTATAATGGACACAATACAGAGAGGACAGAAGGTATAATGAATGGCGAGATCTTGTCTCCTGCTGAGGAGGAAGGGAATGGATATGGAGCGTACACTCTTCCCTGTCGTCGCTCTCACTGCCTGTCAGAAGGGTTGTCCAATCACCAGACTACCATCTGCTCACGTATGCAGGGACGACGAGCACAAACAACACATGATATTACGGCTGGTGAGGGCAGTGAATATGGAGACAGCGGTATTGATGGTGGTGCTGCTGAAGTTGAACATTCCTCCCGCCGTTGTAAGGCCATGTCTGCATCCTTCTCCGTGTACTCCACCGCTAGTGAAAGCATCTTCGCGGGAAGTGACAGTGGCAGTAGCAGCGGAGGCGGAGGAGACCGTCAGCAAGGTGGAGATCAAGGCGTTTATGAGAACTTCCGTCAGGAGCTGGACATGAACTCCCGACAAACAAGGGAATGCCTTGAGGAGGCCAGTTCAGCTGCCAGCGATGAAAGAAGCAGTGGAACTCTGAGCTCCATTTACCCCTCTGACATTCTGCTCACCGCAGTGCAGGGCACTGTACGAAAGGCTGGCATGCTGGCTGTGAAGAACTTTTTGGTGCACAAAAAGAATAAGAGGGTGGAACCAGCAGCAAAAAGGAAGTGGAAGCAGTACTGGGTGTCACTCAAAGGATGCACTCTGTTTTTTTATGAAACGGATGGACGTTCAGGAATTGACCATAACAGCATTCACAAACATGCAGTCTGGGTGGAGAACAGCATTGTCCAAGCTGTCCCAGAACACCCTAAGAAagactttgtgttttgtttaagcAATGCACTGGGAGACGCCTTTCTCTTCCAGACATCAGGTCAGACTGAGCTGGAAAACTGGATAACTGCTATCCACTCAGCCTGTGCGGCAGCCGTCGCCCGCCAGCACCACCGCGAGGACACGGTACGTTTGCTGCGCTCTGAAATCAAGAAGCTTGAACAGAAGATTGACATGGATGAGAAAATGAAGAAGATGGGCGAAATGCAGCTTTCTGCAGTCACTGATGGGAAGAAGAGGAAGACTATCCTTGATCAGaTATTCCTCTGGGAGCAGAATTTGGAGCAGTTTCACATGGACTTGTTTCGGTATCGCTGTTACCTGTCCAGCCTGCAGGGTGGCGAACTTCCAAATCCAAAACGCCTACTTGCTGTTGCTTCCCGTCCCACCAAACTGTCCATGGGTCGTCTTGGCATTTTTTCAGTGTCATCCTTTCACGCCCTGGTGTTTGTAGACGGTGAACAGCCGGTTAAGAGGAATCTGGAGCACATGTTTGAGGACACTGGGAAGAATACGCTGCACAAAGACAAAGACGGTTCATTGAAAAGCCTGCCTCAACACAAGACAGACAATGAAGTTTGGGTTCCCGACTACCTCACGCCATCCTGGGTCTCTTTACCTGACGATCGTCCAGTGTTGGCTATCATACAACCTGGAGAGACGGCCATGGAGGCCCTGGAGGCCCTGTGCAAGGTTCACAAACTGGAACTCTCCAAACACTACATACGGCTGAAGTTTCTCATCGACAATCAAGTGCAATTGTACGTCCCCAGACCAGAAGAGGACCTCTGTGACCTGCTCTACAAAGAAATCGAAATTTGTGCCAAGACAACCAAAGTCATCCAGTTTGACAGAGATGAGTCCTGTGCCATAGGCTATGGTTTCTCTGTGGCAGTGGTAGAGGAGGATGGAGGCCAGCAGCTTCATATCACTGATGTGAAAGCAGGAGGTCTGGCATTTGCCAAAGGTCTGCGAGCCGGCGATGAGATCCTGAAGTTGAACAGTAAACCTGCGAGTGTATTGGAGTTGGCAGACATGCAGGCTGCGTTTGCTCTGCCCTCTCTCACCCTGACTGTCAGCACGCTGCCCGCTGCCGATCCGCACCAGTTGTGCCAGCTTCCTCCTCGCAGATCAGACGGAGCGCAAGACCTCTGCACTGACATCTTCTCCCAGAGTCAAGAGGACATCCTGGATGAAGGTCTTGGCCTTGTGCTGCATAGCCCCGATGACACAGGCGACGACAGGGTAAACCTGATGGCTGAGAGCCCCGCTGACAGCCTGGAGGATGAAATCGACTCGGCACACAAGAGTACAGAGCAGGTGACCGCCTTCTGCCGCAACCTTCATGATATGAATTCCAACGAGGGTCCCGTCTCCTGTTCCTCATCTTCCTCCACTTCTTCCTCATCTTCATCCTGCATGCCCAGCCCAATCTCTCCACTGCCTGGTCTTTTCACCCCTCGCCAGCTCTCTGACGCAGATAAACTCCGCAAGGTCATCAGTGAGCTGGTGGACACTGAGAGGACCTACGTTAAGGACCTGAACATTTTAATAGAGCGCTACCTGAACCCCCTGCAGAAGGAGAGCTTCCTCACCCAGGATGAGCTGGACGTGCTGTTTGGAAACTTGGCGGAGATGGTGGAATTCCAAGTGGAGTTTCTAAAAACTCTAGAAGATGGAACCAGATTAGTTCCAGATTTAGACAAACTGGAGAGAGTCGATCAGTTCAAGAAAGTTCTGTTTTCTCTTGGCGGATCTTTCCTCTACTATGCGGACCGTTTTAAGATCTACAGTGCATTTTGTGCCAGTCACACAAAAGTCCCCAAGGTCCTTACCAAAGCTAAAACAGACCCAGAGTTCAAGGCATTTCTGGCTGAGAGGAACCCCAGACAGCAGCATTCCTCCACGCTGGAGTCCTACCTGATCAAACCTATTCAGAGAGTCCTAAAATACCCACTGCTCCTGAGGGAGCTTTACTCGCTCACCGACCCCGACAGCGAGGAGCACTACCACCTGGATGTGGCGATGAAAGCCATGAACAAAGTGGCCAGTCACATAAACGAGATGCAGAAGATTCACGAGGAATACGGAGCCGTGTTTGACCAACTCATCAGTGAACAGAGCTCAGAAAAGAAAGAGGTTGCTGATCTGTCAATGGGCGACCTCTTGTTGTATGACACAGTGGTCTGGATTAACCCACCGTCCTCTTTGATGAAGGGGAAGAGAGACCCAGAGCTGGCTGCCTTTGtTTTCAGAACAGCGGTTGTTTTTGTGTGTAAGGACTGCTccaagcaaaagaaaaaaatcGGTGGACCTCACAGAGTGTCAACCCTTGATGAGAGAGACCCATTTCGTTTTAGACACATGATCTCTACAGATGCCCTCCAAGTTCGCAATCTCCCAAATTCCGAGGGCTCTGCAATGTGTGAGATCGTTCACGTGAGGTCAGAATTTGAAGGGAGACCTGAGAGGACTTTCCACATCTGTTGCAGctctccAGAGAGTAAAAAAGACTTCTTAAAGACTGTTCATTCCATCCTGAGGGACAAACAACGGCGCCAGCTTATGAAGACCGAAAGTTTACCTCCAAATCAGCAGTATATTCCCTTTGGAGGGAAGCGGCTTTGTGCGCTAAAGGGTTCACGACCCACCATGAACAGAGCTGTTTCAGCACCATCTCGAACCCTGGGTCAAAGGAAGCTGATTCGTAATCGTATCACCATAGACACAGGTGTTATTTTTGATGACGACTCATCCCAGGATCTATCACCAATCACCCCCACAGAACCCCCATTCCATAAACCCCAGCAGCCCATCCGGGACACCGACCGCTGGGTGGAGGATCAGTTTGACCTTCAGATCTACGAGAACCAGGACGACGTTAAAGAGACGGACATCCTCAGTGATGACGATGAGTACTGCCAGTCCGTCCGGGCCCCATCCTCTGACCCAAGCCTGGAGGAGTCCTTCGAGGCTCTTTCAGTGGAAGGAGATGAAGACAAGGGTCTCAACGGGCTCTCCGAGGACAAATCGAAGAAATCTCACGCCCCCTTGAAACTGACCCTTCTGAGAAAGCAATGCGCAGTGGAGGGTGTTTCTTCGGAGAGGGACTGTGAGGTTATTTGGGTTCGAAGAGACGATTTTAAAAACAGCTGCAACAGTGACATCTTCTGAGCGGAGAGGGAATATGCAAGCTGTAATGCTGTTATTTTTAGACTTGTGCCAGAATAAGGCAGACGCTTACTGAGTCCGAGCTTTCACGGACATGATGCACTGACAATCCTACTGAAAGAAAGCCAGAACTGAAGAGCTTCTTGATGTTTCAAGCCACTTGAAATATCAATGCAAGATCAAGCTGAGGGACATTCGAAGATGCCAACTGTACAGCTCATGTATTTATAGAGGCTTCATACTGACAGACATCAGGCAGCTACGTGTTCATTTAGCTGATGTTTTTGGTTGGAACACAAAATGGTGGTCAGTTTGTTTGCTCGTGCTTCATATCTTCCTTTTTATTCAGGGATTTGTGACTTAATGCCTCGTATATTGTTCTTCGTAATGGCTACAACCCGGAGGGCACCCATGCCAAAATTGCAAATCCATTTGATGTCAATccactaccttgatgtcaaattgacatctaacattggtgtcAAAAAACACATCCGGTATTACAGTCCTGTAATcgatttttgatgtgttttttaatgCTTAAACGTTGTCGTTTGAACATCAAGGTAGCTTACATGCAATGTAGAAAAACAGAATCATACATTTGTAGTTGAAGCCTTCAAATGAGTAACATATTTCATATAGTTTCATATTTTTTGTGTCGTTATTTTGGTGGTCGAAATTTCATCAATGTATTGACGTCAAGGTcttgacatcaaattgatttgcattttgatgtgttttttggaTGTTGCTTTACATCAAGGTGCCCGCCAAAAAGGGGGTGATTTTCATGGAGCACGTCAACATTCCCTTGAAATGCCACGGCTAGTTTTGACCAGCTGTTTAATGCCGTTTCCTTTACATATCCAACCGTTCCCTGCTTGCTGTCTTCGTTCCCTTTTCTTCATAGGTCACCAGCAACCCAGTATTAAAGATCACTGTTCATCCAACACACAGAGAAATATTATTCTACTTGAATTGTGAAGAAAGAACTGCAATAATGTAACTCGTTATTTCGAAAAGGATATCAAACTACCCATGATCCTTTCTCTAGGGGCTTTGGTGTGCTTAGGCACATAAATAAGGCATTATAACTCAAAGCACCCCTGCTAAGTGATAAATGTAGCAGATTTTGTCTTGCTAAGAATGAGATTTGATTTTTATGGTATTTTGTACACTGGTAAAGATAAAGCTGGACATGTTACTCACTCCAAGTGTATTTTAAACACCAGAAACGCCCTTCCATGTGAAATACAATCACTGCACCTTCAGCCATGGTTTCCTTTTAGTGAAATTGACTGTATTTAAAAacgaaaactgtaaaaatgccatACTTTTATCCTCTGCCTTTTTGAAACTGTGTATGTTCATACTGTGGAAATACTTATTAACCTTAAATAAATCTTCCTAATTTA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0090630 activation of GTPase activity biological_process
GO:0050772 positive regulation of axonogenesis biological_process
GO:0007165 signal transduction biological_process
GO:0005829 cytosol cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080325-1 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in activation of GTPase activity; positive regulation of axonogenesis; and small GTPase mediated signal transduction. Predicted to act upstream of or within intracellular signal transduction. Predicted to be active in cytosol; plasma membrane; and synapse. Orthologous to human TIAM1 (TIAM Rac1 associated GEF 1).

Ensembl:

ensembl_id ENSDART00000143978

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005165 lncRNA downstream 2140 25523688 ~ 25570629 (-) True XLOC_002789
TCONS_00006053 lncRNA downstream 76513 25494173 ~ 25496256 (-) False XLOC_002790
TCONS_00006052 lncRNA downstream 77485 25494173 ~ 25495284 (-) False XLOC_002790
TCONS_00005162 lncRNA downstream 162239 25402892 ~ 25410530 (-) False XLOC_002789
TCONS_00005161 lncRNA downstream 162257 25402892 ~ 25410512 (-) False XLOC_002789
TCONS_00005763 lncRNA upstream 58346 25686901 ~ 25687218 (-) True XLOC_002792
TCONS_00005764 lncRNA upstream 62317 25690872 ~ 25691670 (-) True XLOC_002793
TCONS_00005171 lncRNA upstream 68604 25697159 ~ 25699359 (-) False XLOC_002794
TCONS_00006054 lncRNA upstream 503914 26132469 ~ 26142597 (-) False XLOC_002799
TCONS_00005184 lncRNA upstream 512515 26141070 ~ 26142597 (-) True XLOC_002799
TCONS_00005163 mRNA downstream 2122 25464220 ~ 25570647 (-) False XLOC_002789
TCONS_00005160 mRNA downstream 11018 25403023 ~ 25561751 (-) False XLOC_002789
TCONS_00005159 mRNA downstream 29542 25402463 ~ 25543227 (-) False XLOC_002789
TCONS_00005157 mRNA downstream 229248 25325808 ~ 25343521 (-) False XLOC_002787
TCONS_00005170 mRNA upstream 65840 25694395 ~ 25699454 (-) False XLOC_002794
TCONS_00005172 mRNA upstream 69081 25697636 ~ 25716953 (-) False XLOC_002794
TCONS_00005173 mRNA upstream 72156 25700711 ~ 25716841 (-) False XLOC_002794
TCONS_00005174 mRNA upstream 72803 25701358 ~ 25716953 (-) True XLOC_002794
TCONS_00005175 mRNA upstream 133641 25762196 ~ 25769334 (-) True XLOC_002795
TCONS_00005164 other downstream 73295 25494173 ~ 25499474 (-) True XLOC_002790
TCONS_00005133 other downstream 1117037 24455616 ~ 24455732 (-) True XLOC_002771
TCONS_00005130 other downstream 1189388 24383266 ~ 24383381 (-) True XLOC_002768
TCONS_00005129 other downstream 1192993 24377417 ~ 24379776 (-) True XLOC_002767
TCONS_00005104 other downstream 2741340 22828366 ~ 22831429 (-) True XLOC_002753
TCONS_00005183 other upstream 503914 26132469 ~ 26141081 (-) False XLOC_002799
TCONS_00005187 other upstream 567729 26196284 ~ 26202523 (-) False XLOC_002800
TCONS_00005203 other upstream 1115041 26743596 ~ 26744131 (-) True XLOC_002804
TCONS_00005214 other upstream 1377716 27006271 ~ 27009124 (-) False XLOC_002814
TCONS_00005218 other upstream 1541401 27169956 ~ 27170072 (-) True XLOC_002817

Expression Profile

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