RNA id: TCONS_00005175


Basic Information

Item Value
RNA id TCONS_00005175
length 1006
RNA type mRNA
GC content 0.37
exon number 7
gene id XLOC_002795
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 25762196 ~ 25769334 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttatagatataaGCAATGTGCAGAGGTTTCAGAATGGTGAAGTACACATCCTGCAAGAGGAAGACATCAAGCAAATAACAGATGCCATCGCTCAGGGAGGTGGACCAGGGATCACAACTATAACCAGAGTATTAAAACCAGAGCCTCGGGTTGTTGAAAGTGAACCAGGGATCACCACCTTTACCAGAGTCATCAAGAAAAAGCCTCAGATTGTCGATGGTGCACCATTGGAAACTACTTTTACTAGAGTAATTAAACCAGAACCGCAGATCATTGAAGgaCCTGATTTCTCAAAGATTGTATCTTTGAAGGACAATCCAGAACTATTTGAATCAGAAACAGAGAGAATCACCAGAATCATCAAGGATGGACGTTCTCGAAAACGAGCTGCCATCAGACAACTACAAGGATCAAGACGAAGAGCAAGACTGGTCAGACATCCCACCAAACCCACACAGTGAGATGAATGGAGACCCTGAGATCCAGTTTAGGTGAATGACAGTGTTGTAGAAGAGTGTGTTTTTGTCCTGAAAATACACAATCCGCATCGAAtgtttacacattaaaaaaaccAATGTGCAGTAATATCTTGGATTTGTGTGGCATAAACACCCCACTTCAGTTCTGATAAGGGGTACTTGAAATGATGGTGGTTAAAAAAAGACATTGgtgggttttgtttgtttttaagctgTTTATATTGTTTCTCtgaatatatatagtgtataagcCTTGTCACTGAGCTTGTCGTGATATTTTGTGGTGCTTGCGTTCAGAGACatgaatgcatttttaatataTCTTTAAGGCTGAGCAAAGCTTTGgctgttgtgtttgttttaaattatgtcCAATAACTGTCCATTTATTTCTGGTTTCTAAGTTCATTTTTAtggacattttcaaaaaaaaatgtttttagaattACATCTTTCATGACAATACTTTTTTGTATAAATTTCAAAGTCTCAatgtagcaaaaaaataaatcaatttctgCTTATAA

Function

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0007155 cell adhesion biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0050839 cell adhesion molecule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091113-23 Predicted to enable cell adhesion molecule binding activity. Predicted to be involved in cell adhesion and extracellular matrix organization. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in caudal fin skeleton; digestive system; epidermis; and pronephros. Human ortholog(s) of this gene implicated in congestive heart failure. Orthologous to human POSTN (periostin).

Ensembl:

ensembl_id ENSDART00000134176

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005171 lncRNA downstream 62837 25697159 ~ 25699359 (-) False XLOC_002794
TCONS_00005764 lncRNA downstream 70526 25690872 ~ 25691670 (-) True XLOC_002793
TCONS_00005763 lncRNA downstream 74978 25686901 ~ 25687218 (-) True XLOC_002792
TCONS_00005168 lncRNA downstream 186623 25574557 ~ 25575573 (-) False XLOC_002791
TCONS_00005165 lncRNA downstream 191567 25523688 ~ 25570629 (-) True XLOC_002789
TCONS_00006054 lncRNA upstream 363135 26132469 ~ 26142597 (-) False XLOC_002799
TCONS_00005184 lncRNA upstream 371736 26141070 ~ 26142597 (-) True XLOC_002799
TCONS_00006055 lncRNA upstream 671718 26441052 ~ 26447113 (-) False XLOC_002802
TCONS_00006056 lncRNA upstream 671718 26441052 ~ 26447171 (-) True XLOC_002802
TCONS_00006057 lncRNA upstream 1067502 26836836 ~ 26872413 (-) True XLOC_002807
TCONS_00005172 mRNA downstream 45243 25697636 ~ 25716953 (-) False XLOC_002794
TCONS_00005174 mRNA downstream 45243 25701358 ~ 25716953 (-) True XLOC_002794
TCONS_00005173 mRNA downstream 45355 25700711 ~ 25716841 (-) False XLOC_002794
TCONS_00005170 mRNA downstream 62742 25694395 ~ 25699454 (-) False XLOC_002794
TCONS_00005166 mRNA downstream 104690 25572372 ~ 25657506 (-) False XLOC_002791
TCONS_00005176 mRNA upstream 1133 25770467 ~ 25816558 (-) False XLOC_002796
TCONS_00005177 mRNA upstream 1697 25771031 ~ 25817854 (-) True XLOC_002796
TCONS_00005178 mRNA upstream 50662 25819996 ~ 25823258 (-) True XLOC_002797
TCONS_00005179 mRNA upstream 59928 25829262 ~ 25860102 (-) False XLOC_002798
TCONS_00005180 mRNA upstream 60939 25830273 ~ 25852517 (-) True XLOC_002798
TCONS_00005164 other downstream 262722 25494173 ~ 25499474 (-) True XLOC_002790
TCONS_00005133 other downstream 1306464 24455616 ~ 24455732 (-) True XLOC_002771
TCONS_00005130 other downstream 1378815 24383266 ~ 24383381 (-) True XLOC_002768
TCONS_00005129 other downstream 1382420 24377417 ~ 24379776 (-) True XLOC_002767
TCONS_00005104 other downstream 2930767 22828366 ~ 22831429 (-) True XLOC_002753
TCONS_00005183 other upstream 363135 26132469 ~ 26141081 (-) False XLOC_002799
TCONS_00005187 other upstream 426950 26196284 ~ 26202523 (-) False XLOC_002800
TCONS_00005203 other upstream 974262 26743596 ~ 26744131 (-) True XLOC_002804
TCONS_00005214 other upstream 1236937 27006271 ~ 27009124 (-) False XLOC_002814
TCONS_00005218 other upstream 1400622 27169956 ~ 27170072 (-) True XLOC_002817

Expression Profile

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