RNA id: TCONS_00006057


Basic Information

Item Value
RNA id TCONS_00006057
length 827
lncRNA type read_through
GC content 0.47
exon number 2
gene id XLOC_002807
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 26836836 ~ 26872413 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGAAATAAAGCAAGCTTCAGCGTGCGCGCATGGAGCCGTTTCAGTCAGAAGAACCGCCCTTCAGCACTGCGTATTTAGGAAGCACGCGCGCTATAACGGAAAAGAAATCATAACTTACCATTTCTTTGTACATTCCAGGACAAGTTCTTGATACGAAGCCACGAACTGAAATTTGGTGGCTTTTTTGCCAACTCTTTGTAACCTTTTCCACACCGAAGTCATTCTTCTGTAGGAAATGCAGTATCCGCGAATGAAGTCAGGCGCATGGAAATAAGCTTTCTACCGTCCCGCCACTGcacaaaaagtacaaaaactaCTCGAATATATGGCTGTCAAGTGGCTCGCGAAGTGAAATGTCCTTGCTGAGGAGCACAAGCAGCAGCTCATGCGGCTCAGTCCCACCGAACTGTCGCCATCGAGTAAAGACCATTTACGGAAACTACTGCATCACGTTACACACACCAGAGCAGACTGTCAGTGTATGACAATTAGTTGACTTGGTGCAAAAAGCAACATCTGTGCGTAAGAAATAGAGAGGAAGGACTTCATCTTTCGCGTCATGGAGCGTCAAGAGatgaagtgtttttaaaagcagctGTCTGACAATGAAGTGATGAAAGTGGAGGAAGAAGTGCAGGAGTAGaATAACCATTTTCGGTGTTGAAGGAGCTCTCGCAGAGGGAGGACGAGATGTCCTGGAAGGCTCCTTTGTATTCCTGGATGGACTCGTATAAAGACCACAGCTGGCACAGCAAGGACATGTCTAACTGCCGGAGGCCAACCTGCAACAGACACAAGGAGACATGAGCTGTGTGGATTCACAAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006056 lncRNA downstream 389665 26441052 ~ 26447171 (-) True XLOC_002802
TCONS_00006055 lncRNA downstream 389723 26441052 ~ 26447113 (-) False XLOC_002802
TCONS_00006054 lncRNA downstream 694239 26132469 ~ 26142597 (-) False XLOC_002799
TCONS_00005184 lncRNA downstream 694239 26141070 ~ 26142597 (-) True XLOC_002799
TCONS_00005171 lncRNA downstream 1137477 25697159 ~ 25699359 (-) False XLOC_002794
TCONS_00005206 lncRNA upstream 20154 26892567 ~ 26895076 (-) True XLOC_002808
TCONS_00006058 lncRNA upstream 28859 26901272 ~ 26902305 (-) True XLOC_002809
TCONS_00006059 lncRNA upstream 119396 26991809 ~ 26999496 (-) False XLOC_002812
TCONS_00005211 lncRNA upstream 128149 27000562 ~ 27002404 (-) False XLOC_002813
TCONS_00006061 lncRNA upstream 128149 27000562 ~ 27002614 (-) False XLOC_002813
TCONS_00005205 mRNA downstream 43388 26771047 ~ 26793448 (-) True XLOC_002806
TCONS_00005204 mRNA downstream 70056 26762793 ~ 26766780 (-) True XLOC_002805
TCONS_00005200 mRNA downstream 92670 26716362 ~ 26744166 (-) False XLOC_002804
TCONS_00005199 mRNA downstream 92670 26716362 ~ 26744166 (-) False XLOC_002804
TCONS_00005201 mRNA downstream 92705 26716616 ~ 26744131 (-) False XLOC_002804
TCONS_00005207 mRNA upstream 109841 26982254 ~ 26985231 (-) True XLOC_002810
TCONS_00005208 mRNA upstream 114695 26987108 ~ 26989875 (-) True XLOC_002811
TCONS_00005209 mRNA upstream 119392 26991805 ~ 26997344 (-) False XLOC_002812
TCONS_00005210 mRNA upstream 126001 26998414 ~ 26999482 (-) True XLOC_002812
TCONS_00005212 mRNA upstream 133853 27006266 ~ 27009584 (-) False XLOC_002814
TCONS_00005203 other downstream 92705 26743596 ~ 26744131 (-) True XLOC_002804
TCONS_00005187 other downstream 634313 26196284 ~ 26202523 (-) False XLOC_002800
TCONS_00005183 other downstream 695755 26132469 ~ 26141081 (-) False XLOC_002799
TCONS_00005164 other downstream 1337362 25494173 ~ 25499474 (-) True XLOC_002790
TCONS_00005133 other downstream 2381104 24455616 ~ 24455732 (-) True XLOC_002771
TCONS_00005214 other upstream 133858 27006271 ~ 27009124 (-) False XLOC_002814
TCONS_00005218 other upstream 297543 27169956 ~ 27170072 (-) True XLOC_002817
TCONS_00005228 other upstream 541833 27414246 ~ 27414362 (-) True XLOC_002819
TCONS_00005237 other upstream 1326481 28198894 ~ 28199041 (-) False XLOC_002823
TCONS_00005238 other upstream 1420430 28292843 ~ 28292959 (-) True XLOC_002825

Expression Profile

//