RNA id: TCONS_00006059


Basic Information

Item Value
RNA id TCONS_00006059
length 2205
lncRNA type read_through
GC content 0.45
exon number 3
gene id XLOC_002812
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 26991805 ~ 26999496 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACTTGCCCGAATACAATAACAAATCGGAGCACTAAACGCTTCCGGTGTTTAAGGTCATTGGGACATGCCGATATGTTGCTCTTAAAGATGAAGCTAGTGGGCAGTTCTCTATTAAAATTGTGAATAATGAACATAAACAGTTTTATGAACAGAAGAGAACAATACTGAGAGCTTCGACACTTTCATCCGCTCGGAAACTACAGACTGTCACCTGAACATGTCCAATCCCGCGCCGCTGGAGGAGAAGGTGAGTCCGCAGAAGAGCAGCAGATCTGCGGCCGGAGACTGCTGGAGCTGCCGCCTGCTCTCCGGCGGAGGACTCATCGCTGCAGGGATTTATGTGTTCGCGCAAGTGCACAGGAGAAATCTCGGTAAACCCCCAACAGTGAGCGCGGTGTTACAGATGATGTTCGCCACAGGTCTGAGCGCCTGGGGGATTGTGCTGATCGCTAATCCGGTGGGAAAAATTACAAGCAAATAGCTTTGGACTGTTTCTTTATTGACATGGAATTTTATACTGAATCAGCAAAGCCATGTTGATGCTGCAAAGttaaatgaaatgtaaacaaTTGTCAAAATGTCATCAAACTTTcactaaatgttttaatttgcaaACTACAAAGTCTTGATTGTCACTGTCATCCTACTgatttacattttgattttattttacctCAGAAGGAACCTTACGCAACATGAGTATAGCTCATAAAGTGCACAAATGGGTTTGTTTTTATAAATCAGGTGGCTTTTCTACTATTATTTTAGTGACACAGCACCAGTTACAGTGAATTCTCTCCTCTGTGCCCTGCCGCTATCACTTGTTCTATTTTGCATTAACCTAAAAGGATCAACGTTTGTCCACAAAGTCAGTGTGtcaattattcattcactcattccgcttagtctctttatttatcaggggtcgccacagcggaatgaactgccaacttatccagcacatgttttcacacagcggatgcccttccagccacaacccaacactgggaaacacccatgcactcttgcattcacacacagaggaaacccctgccaacacggggagaacatgcaaacataatcaccccaggggtcgcaaaaaAAGGGAGAGGCTGAGggctttttatttgtatgttcattcattttctgccacttttctggGGCCGGATCGCAGGggtagcagtcttaggagagaaccccagacttccctctccccagacacttcctccagctcctccggggggatcccaaggcgttcccaggccagcctaGAGATATAGTCCCTCCATGCCTGGAAAACCTCCCTAGGTAGaagtccaggaggcatctgaaacagatgcccgagtaacctcagctgacttctctcgatgtggaggagcagcagctctactccaagctcctcccccTATCCATAAgtgtgcaccctgccacccttcgaaggaaactcattttggccgcttgtatccgagatcttgtcctttcggtcatgaccataggtgagagtaggagcgTAGATTGATTTGTAAggtgttgtttttaatttaactagTAACTACTATTTAGtttcttctgtgggttatggataacATATTGTAATTCtaacagtttaataaaataaagcattaggTTTATAGAAATCACTAAGCAACCTCTACTTTAGGAATATACACTCCACTCCAGCAGGTGGCCTAAATAAGCTGCTTTGCCAACCGACAAAaagcaaagaagaagaagaaggtcGTCAATGACATAAACGCTAGTTTTTGTTTTGAAACAGAAGAAAGCTCTACACGGGAGCTTGATACTGTACACATTTTACCCGAACATGTCGAATCCGCCGCCATTGTTAGAGCACACTCTAGAGGCCTTTTTTAACTGCTGGAGGTGTCGAGTCGTGGCCTGCGGGGGACTCATCGCTTCAGGACTGTTTGTGTTCGGGGCGGCGCGCAGAAGAAATCTGGGCAGACCCTTCAATTTATTCACAGCGGTTCAAATGGCGTCTGCCACAGGTTTGATCACCTCAGGCCTCTTAGTGATCGATGAAAGAGTGGGAATGAAGGATACAGGCAAATGACTCTGGACTTGATCTTCTACATTGTCATGGACTCTTTTATTAAATCAGCAAAGCCACATTGGGTTGATGCTGTGAATTTAAATCGTATTCAAATGACAAGTGtctttgattaaatgttttttatttgcaa

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006058 lncRNA downstream 89504 26901272 ~ 26902305 (-) True XLOC_002809
TCONS_00005206 lncRNA downstream 96733 26892567 ~ 26895076 (-) True XLOC_002808
TCONS_00006057 lncRNA downstream 119396 26836836 ~ 26872413 (-) True XLOC_002807
TCONS_00006056 lncRNA downstream 544638 26441052 ~ 26447171 (-) True XLOC_002802
TCONS_00006055 lncRNA downstream 544696 26441052 ~ 26447113 (-) False XLOC_002802
TCONS_00005211 lncRNA upstream 1066 27000562 ~ 27002404 (-) False XLOC_002813
TCONS_00006061 lncRNA upstream 1066 27000562 ~ 27002614 (-) False XLOC_002813
TCONS_00006060 lncRNA upstream 1066 27000562 ~ 27002614 (-) True XLOC_002813
TCONS_00006063 lncRNA upstream 158441 27157937 ~ 27162145 (-) False XLOC_002816
TCONS_00006062 lncRNA upstream 158441 27157937 ~ 27162145 (-) True XLOC_002816
TCONS_00005208 mRNA downstream 1934 26987108 ~ 26989875 (-) True XLOC_002811
TCONS_00005207 mRNA downstream 6578 26982254 ~ 26985231 (-) True XLOC_002810
TCONS_00005205 mRNA downstream 198361 26771047 ~ 26793448 (-) True XLOC_002806
TCONS_00005204 mRNA downstream 225029 26762793 ~ 26766780 (-) True XLOC_002805
TCONS_00005199 mRNA downstream 247643 26716362 ~ 26744166 (-) False XLOC_002804
TCONS_00005212 mRNA upstream 6770 27006266 ~ 27009584 (-) False XLOC_002814
TCONS_00005213 mRNA upstream 6773 27006269 ~ 27009470 (-) False XLOC_002814
TCONS_00005215 mRNA upstream 7075 27006571 ~ 27009413 (-) True XLOC_002814
TCONS_00005216 mRNA upstream 28523 27028019 ~ 27049170 (-) False XLOC_002815
TCONS_00005217 mRNA upstream 28547 27028043 ~ 27046639 (-) True XLOC_002815
TCONS_00005203 other downstream 247678 26743596 ~ 26744131 (-) True XLOC_002804
TCONS_00005187 other downstream 789286 26196284 ~ 26202523 (-) False XLOC_002800
TCONS_00005183 other downstream 850728 26132469 ~ 26141081 (-) False XLOC_002799
TCONS_00005164 other downstream 1492335 25494173 ~ 25499474 (-) True XLOC_002790
TCONS_00005133 other downstream 2536077 24455616 ~ 24455732 (-) True XLOC_002771
TCONS_00005214 other upstream 6775 27006271 ~ 27009124 (-) False XLOC_002814
TCONS_00005218 other upstream 170460 27169956 ~ 27170072 (-) True XLOC_002817
TCONS_00005228 other upstream 414750 27414246 ~ 27414362 (-) True XLOC_002819
TCONS_00005237 other upstream 1199398 28198894 ~ 28199041 (-) False XLOC_002823
TCONS_00005238 other upstream 1293347 28292843 ~ 28292959 (-) True XLOC_002825

Expression Profile

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