RNA id: TCONS_00005763


Basic Information

Item Value
RNA id TCONS_00005763
length 243
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id XLOC_002792
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 25686901 ~ 25687218 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGCAACATGTTACATGAAAGACGACGACAATTACCAGAGAAGGCAACAATACTAGCTGTATTTtcaggtttaaaaaaaagtaaaaggcAAATGACACCAAGACTCCAAAAATGACTAACGTTATAGACACGTCGTGCTATTTTAATCTCATAACGAAGGGTACAAGGTTTACATTTCGACAGGAAGTCAGAAGATTGTCAACAATTACTCGTCAAAAGATTTTAAAGTATGCTTCAGTCTAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005168 lncRNA downstream 111328 25574557 ~ 25575573 (-) False XLOC_002791
TCONS_00005165 lncRNA downstream 116272 25523688 ~ 25570629 (-) True XLOC_002789
TCONS_00006053 lncRNA downstream 190645 25494173 ~ 25496256 (-) False XLOC_002790
TCONS_00006052 lncRNA downstream 191617 25494173 ~ 25495284 (-) False XLOC_002790
TCONS_00005162 lncRNA downstream 276371 25402892 ~ 25410530 (-) False XLOC_002789
TCONS_00005764 lncRNA upstream 3654 25690872 ~ 25691670 (-) True XLOC_002793
TCONS_00005171 lncRNA upstream 9941 25697159 ~ 25699359 (-) False XLOC_002794
TCONS_00006054 lncRNA upstream 445251 26132469 ~ 26142597 (-) False XLOC_002799
TCONS_00005184 lncRNA upstream 453852 26141070 ~ 26142597 (-) True XLOC_002799
TCONS_00006055 lncRNA upstream 753834 26441052 ~ 26447113 (-) False XLOC_002802
TCONS_00005166 mRNA downstream 29395 25572372 ~ 25657506 (-) False XLOC_002791
TCONS_00005167 mRNA downstream 58346 25572769 ~ 25628555 (-) False XLOC_002791
TCONS_00005169 mRNA downstream 95707 25581941 ~ 25591194 (-) True XLOC_002791
TCONS_00005163 mRNA downstream 116254 25464220 ~ 25570647 (-) False XLOC_002789
TCONS_00005160 mRNA downstream 125150 25403023 ~ 25561751 (-) False XLOC_002789
TCONS_00005170 mRNA upstream 7177 25694395 ~ 25699454 (-) False XLOC_002794
TCONS_00005172 mRNA upstream 10418 25697636 ~ 25716953 (-) False XLOC_002794
TCONS_00005173 mRNA upstream 13493 25700711 ~ 25716841 (-) False XLOC_002794
TCONS_00005174 mRNA upstream 14140 25701358 ~ 25716953 (-) True XLOC_002794
TCONS_00005175 mRNA upstream 74978 25762196 ~ 25769334 (-) True XLOC_002795
TCONS_00005164 other downstream 187427 25494173 ~ 25499474 (-) True XLOC_002790
TCONS_00005133 other downstream 1231169 24455616 ~ 24455732 (-) True XLOC_002771
TCONS_00005130 other downstream 1303520 24383266 ~ 24383381 (-) True XLOC_002768
TCONS_00005129 other downstream 1307125 24377417 ~ 24379776 (-) True XLOC_002767
TCONS_00005104 other downstream 2855472 22828366 ~ 22831429 (-) True XLOC_002753
TCONS_00005183 other upstream 445251 26132469 ~ 26141081 (-) False XLOC_002799
TCONS_00005187 other upstream 509066 26196284 ~ 26202523 (-) False XLOC_002800
TCONS_00005203 other upstream 1056378 26743596 ~ 26744131 (-) True XLOC_002804
TCONS_00005214 other upstream 1319053 27006271 ~ 27009124 (-) False XLOC_002814
TCONS_00005218 other upstream 1482738 27169956 ~ 27170072 (-) True XLOC_002817

Expression Profile

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