RNA id: TCONS_00005179


Basic Information

Item Value
RNA id TCONS_00005179
length 4288
RNA type mRNA
GC content 0.45
exon number 11
gene id XLOC_002798
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 25829262 ~ 25860102 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gagagagagagagaatgcagACAGGACATCTGGTAGCCTTTGCGCTCCAAGTCTCTTCAATGATCAAAATAACTCTTAACGAAAGCTGAGAAAGCGTCACATCAAAGTGTGATGACACCTGCATGGGAAAGAGAATATGCAAGATGATAGACGATTACAGATGTCAGACGCGCACTTTATGGAGGCAACTAACATGTTTGGCTTTGGGAAACTCTGCAGATTAGCTCCATCTTGAATGCGAAATGAGAGGATTATTGAGCTTCGCCGCGCGTCCAAATGGATATTATTTTCCCGCGTTCTATTTCCATCGTTGCGCATTTTCGCGCTTTTTTCTCTGTGGAGGCGGTTGGAGCGTAACGGGTTTTCTACGCGCTGGGCACCTGTTGTACGTTAGTTAGACGGAATCAGTCACGAGTCAGTGCAACATCCAAAACCAACAGCCCCAGTCGACTCACATGAAGGCATAGCAGCAATGTCACAGCAATACTTTCGCAGAACGGAAAACTTCTTGTACAGGGACCGGATCCCGCTGCGGATAGTTCGATCCGAGTCTGAGCTGTCACCGCTGGAAAAGGCCTACCTGTGGGCTGTGGAGAAAGGCGACTATGGCAGCGTCAAGCAGGCACTCATAGAAGCCGAGATCTACTTCAAAATCAACATCAACTGCATAGATCCTCTGGGGCGAACGGCTCTGTTGATTGCAATCGAGAACGAGAATCTGGAAATCATCGAGTTGCTGCTCAGCTTTAACGTGTATGTGGGGGATGCGCTTTTACACGCCATACGAAAGGAGGTGGTGGGAGCTGTGGAGCTGCTTTTGAACCACAAGAAGCCCAGCGGGGGCATGCAGGTACCTCCTATCCTGTTGGACAAGCAGTTTTCTGATTTTACCCCTGACATCACACCCATAATCTTGGCCGCACACACCAACAACTATGAGATCATTAAGATGCTGGTACAGAAAGGTGTCTCCATGCCACAGCCCCACCAGGTGCGCTGTAACTGCATGGAGTGCGTGTCCAGCTCAGACGTAGACAGCCTGAGACACTCCCGATCCCGTCTCAACATCTACCGAGCCCTAGCCAGTCCATCACTTGTCGCCCTCTCCAGCGAGGACCCCTTCCTGACGGCCTTCCAGCTCAGTTGGGAACTCCAAGAGCTCAGCAAAGTAGAAAACGAATTCAAGTCGGAGTACGAAGAGCTTTCCCAGCAGTGTAAACAGTTCGCCAAAGACCTGCTCGACCAAACACGCAGCTCCAGAGAGCTCGAGCTGATTCTGAACTACAAAGATGATATAAATCTTCTGGAGGATGAAGGCATTAATGATCTGGCCAGGCTGAAACTGGCCATCAAGTACCATCAGAAAGAGTTTGTAGCACAGCCAAACTGTCAGCAGCTGCTCGCGTCTCGCTGGTATGATGAGTTTCCAGGCTGGAGACGCCGCCATTGGGCCAGCAAGTTCATGACCTGTATCTTCATCGGACTTCTCTTCCCTTTCTTCTCACTCTTCTATCTGATCGCCCCAAAGAGCCACTATGGCTTGTTCATCCGAAAACCCTTCATAAAGTTTATATGCCACACTGCATCATATCTGACCTTCCTCTTCCTCCTGCTTTTGGCATCTCAACATGTAAACCGCAACCTCCTCGACCAAGACGAGAACTCAGACTGCAAAAACGAGAACTTAAGGCAGAACCTAGCACCCACCACTGTTGAATGGATGATTCTACCCTGGGTTTTAGGATTTGTATGGGCAGAAATCAAACAAATGTGGGATGGTGGCTTTCAGGATTACATTCACGACTGGTGGAACCTCATGGACTTTGTCATGAATTCTCTATATCTGGCCACCATCTCTTTGAAAATTGTTGCTCTCAGCAAGTATAACAACCAGTGCCGTGACGAATGGGACATGTGGCATCCGGCCTTGGTGGGCGAGGCCTTATTCGCCATTGCTAATATATTTAGCTCTCTAAGACTGATTTCACTCTTCACTGCCAACTCTCACCTGGGTCCTCTTCAGATTTCCCTGGGCCGAATGCTGCTGGACATCCTCAAATTCCTCTTCATTTACTGCTTGGTGCTGCTCGCCTTTGCAAACGGACTCAATCAGCTTTATTTCTATTATGAATCCGACGGCAAAACTAGCAACAACGTCACATGCAAGGGTATCCGCTGCTCAGAGCAAAACAATGCATTTACAACtatgtttgagaCACTTCAGTCATTGTTCTGGTCCATATTTGGTCTTGTTGCCCTGCATGTGACCAATGTTGATGCCAAACATGACTTTACTGAGTTTGTTGGAGCCACGATGTTTGGGACCTACAGCATTATCTCTTTGGTGGTGCTTCTTAATATGCTTATTGCCATGATGAATAATTCCTACCAACATATTGCTGACCATGCTGATATTGAGTGGAAGTTTGCTAGAACAAAACTTTGGATGAGCTACTTTGAAGAGGGCGGCACTTTACCTCCTCCCTTCAACGTCGTCCCAAGCCCAAAATCAGCGTGGTACCTCATTAGATGGATAAAGACCCACTGCTTCAAAATTAAACAACGAAAAAGAACAGAGACGCTTGGATCACTCGGGATACGAGCTGCTGAAAATGTCCGCACAAACTGTCAGTATCAGGAGGTACTAAGAAACCTGGTTAAACGGTATGTGGCAGCAAGAATCAGAGATGCCAAAAAAGAAGAGGGATTAACAGAAGATAACTTTAAGGAACTTAAGCAGGACATCTCCAGTTTCCGGTACGAGGTGATGGGAATGATGAAGGGCACTAAAACTGGCATGTCGACCTCAAAAGGAAATACAGCAGAATCAAGCCTTGTGTATCCCGAGAACGCTCTGAAGTGTAATTCTACTTCAACTGGAAGTACCCTGAAGGGCAAAATGAGACTACAGAGCATCACCAATACCATGATCCAGGAAGGGGGACCCAAAGCCTGGAAACCCACTGGCTGTAGCAACCTAGCGGACAGTTCTGTCCCAAACAAGAACATTAGCCATCAACTGAACTGCAAAGGGCCAAACAACCCAGGGGAAATGTACTCCGTATCAGAGGAAGCCGGTGAATCTGAGAGCGAGGAACAGGGCGATGGAAAACAAGCAGAAAACCttgattgcaagaaaaaaaagaaccaaaacaaagaaacTGAGAAGGATGGAGTGAATAATGATGTGGAGGAAGATGAGGAATTGACGTACATGCGTTATATGTGTGAGgaagaaatgaatgaaggaaatgaAGGTGAAACTAGCAGATTATAACAGTATTAAAagtgaagaggaagaagaagttTGTTCTCTTGACCTCAGAGTTCAACTGTGGTGAAGGTAAAGTGCAGGGTGATGATCCAAAAATCAAGTTTTGTTGTTTGGGAGTCTCAGGGATGATTGTCTCTTTTAGGAGAATACGGGGTTCAGCGTTGTCATTCACAGTGATTTACACTCAGTCAAGTGTGACACTCCTGTAGTTTTTCGCTGCTCTGCTCCTCTTTCATATACAGTATGGAGGAGCGTTAGCCCACTTTTTGCGACCTTTCATTCTGCCTTACTCCGTTAGATTTACCTGTAGTTCCAGCCCattctcacaaggaaacgtaactattttacgtattgtcagaaaagtggctaatgtgtacaaattcatacaattgAATTCGGATTAAAACgtaccattttttaaaaagaggtaTGCCCACAATCCCCACCCCTATCTCTCATTGTGGGATGAGCAAACACTGCTAAAAAGTATGAATGAGATTGAACTAATGattacgaattagctactaaatcaaaaagttacgaattgccacgAGATTTTGTTGGTAGGTCCAACATAAAAAAGATGTCATTTCTGTCATGCAACCTAATATCTTTAATAAAGGTTACTATGcaattatttacaactttttaaactttttagtcGCATTTTACATTGCCCATGAGGCAACTGTGTGAGAAAAGAAGCAGGTTGAAGGGTGTCTTTTTTATAAACGTGGATAAAGTCCAAAGTAAACACTACATATCATAAAATCAACACACTGTAAAATTGTGTTACAGTAATCATGTATGTTTCATCCTCTCATTTGTATTTACAAGGGTTTGGAGAACACTGTATTGCAACAATGGTACATTCTTTTATGCATCTGAACGTCATATTCCATCTATCCTCGTTGTTTACATGATAGGTTACTGCCTTGTGTTACCGATCTtgcataaatgcacaaatataaataaatatatgctgTACTATGACTCACTATTATTGTGATTTTG

Function

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005216 ion channel activity molecular_function
GO:0005262 calcium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131217-1 Predicted to enable calcium channel activity. Predicted to act upstream of or within calcium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in nervous system. Orthologous to human TRPC4 (transient receptor potential cation channel subfamily C member 4).

Ensembl:

ensembl_id ENSDART00000080789

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005171 lncRNA downstream 129903 25697159 ~ 25699359 (-) False XLOC_002794
TCONS_00005764 lncRNA downstream 137592 25690872 ~ 25691670 (-) True XLOC_002793
TCONS_00005763 lncRNA downstream 142044 25686901 ~ 25687218 (-) True XLOC_002792
TCONS_00005168 lncRNA downstream 253689 25574557 ~ 25575573 (-) False XLOC_002791
TCONS_00005165 lncRNA downstream 258633 25523688 ~ 25570629 (-) True XLOC_002789
TCONS_00006054 lncRNA upstream 272367 26132469 ~ 26142597 (-) False XLOC_002799
TCONS_00005184 lncRNA upstream 280968 26141070 ~ 26142597 (-) True XLOC_002799
TCONS_00006055 lncRNA upstream 580950 26441052 ~ 26447113 (-) False XLOC_002802
TCONS_00006056 lncRNA upstream 580950 26441052 ~ 26447171 (-) True XLOC_002802
TCONS_00006057 lncRNA upstream 976734 26836836 ~ 26872413 (-) True XLOC_002807
TCONS_00005178 mRNA downstream 6004 25819996 ~ 25823258 (-) True XLOC_002797
TCONS_00005177 mRNA downstream 11408 25771031 ~ 25817854 (-) True XLOC_002796
TCONS_00005176 mRNA downstream 12704 25770467 ~ 25816558 (-) False XLOC_002796
TCONS_00005175 mRNA downstream 59928 25762196 ~ 25769334 (-) True XLOC_002795
TCONS_00005174 mRNA downstream 112309 25701358 ~ 25716953 (-) True XLOC_002794
TCONS_00005181 mRNA upstream 269728 26129830 ~ 26179805 (-) False XLOC_002799
TCONS_00005182 mRNA upstream 270754 26130856 ~ 26163989 (-) False XLOC_002799
TCONS_00005185 mRNA upstream 330705 26190807 ~ 26202766 (-) False XLOC_002800
TCONS_00005186 mRNA upstream 330706 26190808 ~ 26196383 (-) False XLOC_002800
TCONS_00005188 mRNA upstream 342133 26202235 ~ 26226228 (-) False XLOC_002800
TCONS_00005164 other downstream 329788 25494173 ~ 25499474 (-) True XLOC_002790
TCONS_00005133 other downstream 1373530 24455616 ~ 24455732 (-) True XLOC_002771
TCONS_00005130 other downstream 1445881 24383266 ~ 24383381 (-) True XLOC_002768
TCONS_00005129 other downstream 1449486 24377417 ~ 24379776 (-) True XLOC_002767
TCONS_00005104 other downstream 2997833 22828366 ~ 22831429 (-) True XLOC_002753
TCONS_00005183 other upstream 272367 26132469 ~ 26141081 (-) False XLOC_002799
TCONS_00005187 other upstream 336182 26196284 ~ 26202523 (-) False XLOC_002800
TCONS_00005203 other upstream 883494 26743596 ~ 26744131 (-) True XLOC_002804
TCONS_00005214 other upstream 1146169 27006271 ~ 27009124 (-) False XLOC_002814
TCONS_00005218 other upstream 1309854 27169956 ~ 27170072 (-) True XLOC_002817

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_11924813_11936040.mRNA True 3543 mRNA 0.47 10 CI01000304 11924384 ~ 11936358 (-)