RNA id: TU2402159


Basic Information

Item Value
RNA id TU2402159
length 1898
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G2100108
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 7207468 ~ 7213518 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtaaaacccatTCCACAAAGGGTTCaatctggaaccaaaagggttctacattgtACCAAAAATAGTTCTACCTAGAGCCAAAATGTGTTCTCCTATAGGGagagccgaagaacccttttggaaccattttttctaagagtgtaccacaCGACCATACTCCAGCTTAGTTACTATGGATGGGGATAATGAGGTCTAGGCATGAACTGATGAAGAAGAATAGAAGGAGGGAAAGATAACAAAACTAAATACCTTCATCTAATCCTTCCATCTGTGATTTACGTTTACACCATCAACAACCACAACAGACATTCACAAAAACGGGAATATGGAAAAACACAGGATTGGAATGAGAAACATCAGGTGAGTCATGACCTCTATTCCCAAGACCGGAGCCAAGATGGATTCTCACACGTCTCTTCTGGCAGAGAGAAAACCAGACAAATGTCCTAATCTATTTCCATTCAGCCTCATTAAACTTTAATAAATACAAAACTGTTCATCATCACACAGGCCGTTTGGTCAATTTGTTCTACAGATGTACTAGAGGATAATTTTAGAGCCTTCAGAATTAATCTGATTTGAAAGCATTGTGACATTGCGTCCTACACTAAACTCCTTCTAATTTCCTACATTTTATCCGAATCATGGCAAAAGGTTAATTCtccacacgcatgcatgcatgcatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgacacaaacCTTCAGTAATGGAAGCTCATGTTGAGAACAGGAGTAATCTCTCTGACGGATGCCAGAGTCTAAGTGGTTAATGGTAAATAGTTGATGTACTTGTAAATGGTTAATGGAGAACCTCAACGGAGGTAAAGCAGAAAGGAGGGAACTAAACGAATGAAAACAGAACACATCATAATAAATCCCACTGTACTCTCCACTATATGATGCACATGGCATGGACAGGGTTCACATGACTTAATTTACATTTTTCGTTATCGGTCTCCAGCCAGGGACCACTCCCGTAGGAGGACCAAGTGGGGGTGCAGGATGCAGGATAGCGTGGGGACACACTGGTCTAGTGGGGCACAGACAATTGCCCACTGgccgtctcagagtaggagagcGAAAGAGTTTAGTAGAGAGTTTAGTTGTCAATACAGTTCTGTTGTGAGTGATAACAGGGTGCTGGGCCGTTCTGGATACTATAGCTCTGTAATGTTGTGAGTGATAATAGGGGGCTGTTCTGGATACTATAGCTCTGTACTGTTGTGAGTGATAATAAGGGGCTGTTCTGGATACTATAGCTCTATAGTGTTGTGAGTGATAATAGGGGGCTGTTCTGGATACTAATAGCTCTGTGGTGTTGTGAGTGATAATAAGGGTCTCTTCTGGATACTATAGCTCTCTAGTGTTGTGAGTGATAATAGGGGCTGTTCTGGATACTATAGCTCTGTAGTGTTGTGAGTGATAATAGGGGCTGTTCTGGATACTATAGCTCTGTAGTGTTGTGAGTGATAATAGGGTCTGTTCTggatactgtagctctgtagtGTTGTGAGTGTTAATATGGCACTGTTCTGGATACTATAGCCCTGTAGTGTTGTGAGTGATAATAGGGCGGAGTCTCACTATCTATCTGGCTGTCTACGCCACTCTGCCAGCCAAACTACTATGATGATTATGATAGCTCACAAAAAATGGTAATGGTTGTAACAATGATCACTATACTTGCACGTGTATCATACAGCTACTGCTATCCGTTGTAGCATACAAAAACCTCCAGCACTTATCTAATGCTTTTGCTTTATAATGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2402081 lncRNA downstream 113949 6994966 ~ 7093519 (-) True G2100036
TU2402074 lncRNA downstream 212770 6985437 ~ 6994698 (-) True LOC110508409
TU2402063 lncRNA downstream 231569 6975135 ~ 6975899 (-) False G2100024
TU2402064 lncRNA downstream 231569 6975428 ~ 6975899 (-) True G2100024
TU2402061 lncRNA downstream 235266 6971948 ~ 6972202 (-) True G2100023
TU2402162 lncRNA upstream 78 7209443 ~ 7213518 (-) True G2100108
TU2402217 lncRNA upstream 5382 7214747 ~ 7219258 (-) True G2100154
TU2402219 lncRNA upstream 11923 7221288 ~ 7222126 (-) True G2100156
TU2402224 lncRNA upstream 18543 7227908 ~ 7228119 (-) False LOC110509205
TU2402226 lncRNA upstream 22156 7231521 ~ 7231744 (-) True G2100163
XR_002471307.2 mRNA downstream 155095 7039094 ~ 7052373 (-) False LOC110508412
XR_005040218.1 mRNA downstream 155095 7041046 ~ 7052373 (-) True LOC110508412
XM_021588924.2 mRNA downstream 190996 6985740 ~ 7016472 (-) False LOC110508409
XM_021588925.2 mRNA downstream 190996 6985740 ~ 7016472 (-) False LOC110508409
XM_021588926.2 mRNA downstream 190996 6985740 ~ 7016472 (-) False LOC110508409
XM_021590186.2 mRNA upstream 16942 7226307 ~ 7253049 (-) False LOC110509205
XM_036967078.1 mRNA upstream 202399 7411764 ~ 7504744 (-) False LOC110508422
XM_021588943.2 mRNA upstream 329824 7539189 ~ 7564681 (-) False LOC110508425
XR_005040248.1 mRNA upstream 329824 7539189 ~ 7564681 (-) True LOC110508425
XM_036966654.1 mRNA upstream 399869 7609234 ~ 7618301 (-) False sirt6
TU2402165 other downstream 980 7203606 ~ 7206488 (-) True G2100109
TU2401301 other downstream 768372 6426170 ~ 6439096 (-) True G2099318
TU2400957 other downstream 968855 6238169 ~ 6238613 (-) True G2098997
TU2400956 other downstream 969374 6237433 ~ 6238094 (-) True G2098996
TU2400731 other downstream 1209146 5995825 ~ 5998322 (-) False G2098793
TU2402839 other upstream 383929 7593294 ~ 7593815 (-) True G2100707
TU2402916 other upstream 559051 7768416 ~ 7771183 (-) False LOC110508434
TU2402917 other upstream 559051 7768416 ~ 7771183 (-) True LOC110508434
TU2403222 other upstream 784046 7993411 ~ 7998865 (-) True LOC110508443
TU2403426 other upstream 948854 8158219 ~ 8158518 (-) True G2101243

Expression Profile