RNA id: TU2402219


Basic Information

Item Value
RNA id TU2402219
length 839
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G2100156
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 7221288 ~ 7222126 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCATCCATTTTGGCTCCAGAGTGTAGGAGAGTCCCAGCGCTCTCTCAGCCCAAGTACAAAatgttctctccctcttcccttacCTGCCAATCAATCAGAACCAAGTGTCATTGTGATGGTAGAAGACAATCAATTTCCAataaagaggagagaaaagatgGAGAAAGGCAGGCAGAGAACTGCTGAACAGGATGGGGGATTAGGAGGAGGAATGGCTCTCAGGGTGAAACAGCCATTGTGTGTGGCCCCTCCCCTTCGGCCTTCAACCTTTAGGAttgacctctgctgcagaggtcaAGGTGCCAGGGACTCTCCCCAAGGATAATCTGACTGGTTAACTGGACGTTTAATCGAATATGTTTTTCAAATGCCCAAATACACACAAGACAtgtacacacttacacacacacacacacgctcatgtactacacacaggcacacacactgacacattgaaTTGGACTGGACTGGATGTGTGAAAGTAATAAGGCTTACACTTTTACAGTGTGAAGTCTCCAGTGTGTTGCTCTCACATACCAAGCCCTGTAACAAACACATAGTACCCTTTAATTCATTGATTGGTTTATTGATTACTTGATATATTCGCCCTGGGGTTAGCCTCCAATTTTACAGAAATTGAGTTTCTCCAGGATCAGAAGTAATTCTAGTCACATCGCATGTGTATTGTGACTAGATATTGATTTTAAATGTTTATGTACTGGTTCCCTTTAGCACAGAATTCTTTGCAAACACCACAATGTTCACTTCTACCTATCTAGATCCATTCACTCAGGGTTCTGTGACTCTAATGATATACCACAAGACTTATGAGAGCAGA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2402217 lncRNA downstream 2030 7214747 ~ 7219258 (-) True G2100154
TU2402162 lncRNA downstream 7770 7209443 ~ 7213518 (-) True G2100108
TU2402159 lncRNA downstream 11923 7207468 ~ 7209365 (-) False G2100108
TU2402161 lncRNA downstream 13251 7207468 ~ 7208037 (-) False G2100108
TU2402081 lncRNA downstream 127769 6994966 ~ 7093519 (-) True G2100036
TU2402224 lncRNA upstream 5782 7227908 ~ 7228119 (-) False LOC110509205
TU2402226 lncRNA upstream 9395 7231521 ~ 7231744 (-) True G2100163
TU2402241 lncRNA upstream 30716 7252842 ~ 7253057 (-) True LOC110509205
TU2402267 lncRNA upstream 51715 7273841 ~ 7274059 (-) True G2100204
TU2402399 lncRNA upstream 155259 7377385 ~ 7377674 (-) True G2100321
XR_002471307.2 mRNA downstream 168915 7039094 ~ 7052373 (-) False LOC110508412
XR_005040218.1 mRNA downstream 168915 7041046 ~ 7052373 (-) True LOC110508412
XM_021588924.2 mRNA downstream 204816 6985740 ~ 7016472 (-) False LOC110508409
XM_021590186.2 mRNA upstream 4181 7226307 ~ 7253049 (-) False LOC110509205
XM_036967078.1 mRNA upstream 189638 7411764 ~ 7504744 (-) False LOC110508422
XM_021588943.2 mRNA upstream 317063 7539189 ~ 7564681 (-) False LOC110508425
XR_005040248.1 mRNA upstream 317063 7539189 ~ 7564681 (-) True LOC110508425
XM_036966654.1 mRNA upstream 387108 7609234 ~ 7618301 (-) False sirt6
TU2402165 other downstream 14800 7203606 ~ 7206488 (-) True G2100109
TU2401301 other downstream 782192 6426170 ~ 6439096 (-) True G2099318
TU2400957 other downstream 982675 6238169 ~ 6238613 (-) True G2098997
TU2400956 other downstream 983194 6237433 ~ 6238094 (-) True G2098996
TU2400729 other downstream 1222966 5996116 ~ 5998322 (-) True G2098793
TU2402839 other upstream 371168 7593294 ~ 7593815 (-) True G2100707
TU2402916 other upstream 546290 7768416 ~ 7771183 (-) False LOC110508434
TU2402917 other upstream 546290 7768416 ~ 7771183 (-) True LOC110508434
TU2403222 other upstream 771285 7993411 ~ 7998865 (-) True LOC110508443
TU2403426 other upstream 936093 8158219 ~ 8158518 (-) True G2101243

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00034007 True 6733 lncRNA 0.40 3 NC_007113.7 57573353 ~ 57580290 (-)