RNA id: TU2538663


Basic Information

Item Value
RNA id TU2538663
length 3883
lncRNA type intronic
GC content 0.48
exon number 4
gene id G2219531
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 27748382 ~ 27755005 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcataatGTTATTGTACAGGGTGTGTAAGAGGAAGAGGGTGGTGAAGGTGAAGGGTGTGGAATTTAAGAAATTCTTATTGAATGGCTATCATTCAGATCGTTCAAGGTCATTAATGCACCGTGGCTGCGTCCTGCTCTCACACCCACACCTACATCCTGGACCTACTGAAGGCCTACTTCCTCCTGTTCTCTGTCTGAGGGTTGCATTACCCACCGCTGCTAGGCCACATCTGGACCAGCCAGCCCAGCCTAGTGCTGCTCCATCgggaacagtgagaacagtgGTGTTGGCCTAGGTCTCTCGTTCTatagtgttgttgtgtctctcttgtcatggtGTGTGTCTGGACCTATGTTTTTTGTGCCCCCCGCAGGGGGCCTTTTGCtaggacatcattgtaaataaaaaatgtgatcttaattgacatgcctagttaaataaaagttcaatttttaaaaaaaagtaaaaacagTGAAGACagtaagagggaacagtgagaacagtgaggacagtaagagggaacagtgagaacagtaagagggaacagtgagaacagtaagagggaacagtgagaacagtaaaggggaacagtgagaacagtaagGGGGAACAGTAAGAGGAAACAGTAAGAGGAAACAGTAAGAGGCAACAGTAAGAACAGTAAGAGGAAACAGTAGGAACAGTAAGAGTAAACAGTGGAACAGTGAGAGGGAATAGTGAGAACAGTGAGAACTgtaagagggaacagtgagaacagtaagaGGAAACAGTGGGAACAGTGGGAGCagtaagagggaacagtgagaacagcaagagggaacagtgagaacagCGAGAGGGAACagtaagagggaacagtgagaacagtaatagggaacagtgagaacagtaatagggaacagtgagaacagtaatAGGGAACAGTGAGACCTGCGAGAGGGAACCGTGAGAACAgtgagagggaacagtgagagagaacagcgagaacagtaagagggaacagtgagaccagCAAGAGGGAACAATGAGAACAGCAGgagggaacagtgagaacagtgagaacagtaagagggaacagtgagaagAGTAAGAAGGAACAGTGAGAACGGTAAGAGGAAACAGTGAGAATAGCGAGAGGGAACAATGAGAACTTTGAGAACAGTAAGTgggaacagtgagaacagtaagagggaacagtgagaacagtaagaGGAAACAGTAACAGTTaacagtgagaacagtaagaGGAAACAGTAAGAGTTaacagtgagaacagtaagaGGATACAGTGAGAACAGTAAGAGGATACAGTGAGAACAGTGAGAGCagtaagagggaacagtgagaacagtgaaaacagtaagagggaacagtgaaaacagtaagagggaacagtgagaacagtaagaGGATACAGTGAGAACAGTGAGAGCAGCAAGAGGGAACAGTGAGAGCAGCAAGAGGGAACAGTGAGAGCAGcaagagggaacagtgagaacagcgagagggaacagtgagaacagtaagagggaacagtgagaacagtaagagggaacagtgagaacagtaagagggaacagtaagagggaacagtgagagCAGTACgagggaacagtgagaacagtaagagggaacagtgagaacagtaagaGGGAACAGTAAGAGGGATCAGTGAGAGCAGTACgagggaacagtgagaacagtaagaGGAAACAGCGGGAACAGTAAGAGGGAACagtaagagggaacagtgagaacagtaagagggaacagtaagaacagtaagagggaacagtgagaccaGTAATAGGGAACagtgagaccagagagagggaacagtgagaccaGTGAGAGGCAACAGCGAGAACagtaagagggaacagtgagaccagtgagagggaacagtgagaccagtgagagggaacagtgagaccaGTAAGAAGGAACAGTGAGACCAgtgagagggaacagtgagaccagtgagagggaacagtgagaccaGTAAGAGGGAACACTGAGACCAgtgagagggaacagtgagaccagtgagagggaacagtgagaccagtaagagggaacagtgagaccagtgagagggaacagtgagaccaGTGAGAACAGTAAGAGGGAACAGTGGGAACAGTGAAAACAGTAAGAGGGAACAGTGAAAACagtaagagggaacagtgagaacagtaagaGGATACAGTGAGACCAGTGAGAGCAGcaagagggaacagtgagaacagcgagagggaacagtgagaacagcgagagggaacagtgagaacagtaagagggaacagtgagaacagtaagagggaacagtgagCGCAGTACgagggaacagtgagaacagtaagagggaacagtgagaacagtaagaGGGAACAGTAAGAGGGATCAGTGAGAGCAGTACgagggaacagtgagaacagtaagaGGAAACAGCGGGAACAGTAAGAGGGAACagtaagagggaacagtgagaacagtaagagggaacagtgagaccaGTAATAGGGAACAGTGAGACCAGcgagagggaacagtgagaccaGTGAGAGGCAACAGCGAGAACagtaagagggaacagtgagaccagtgagagggaacagtgagaccagtgagagggaacagtgagaacagtaagaAGGAACAgtgagagggaacagtgagaccagtgagagggaacagtgagaccagtaagagggaacagtgagaccagtgagagggaacagtgagaccagtgagagggaacagtgagaccagtaagagggaacagtgagaccagtgagagagaccagtaagagggaacagtgagaccagtgagagggaacagtgagaacagtaagagggaacagtaagagggaacagtgagaccagtgagagggaacagtgagaccagtgagagggaacagtgagaccagtgagaacagtaagagggaacagtgagaacagtaagagggaacagtgagaccagtgagagggaacagtgagaccagtgagagggaacagtgagaccagtgagaacagtaagagggaacagtgagaacagtaagagggaacagtgagaccagtgagagggaacagtgagaccaGTGAGAGGGAACAGTAAGACCAGTGAGAACagtaagagggaacagtgagaacagtaagagggaacagtgagaccagtgagagggaacagtgagaccagtgagaacagtaagagggaacagtgagaacagtaagagggaacagtgagaccagtgagagggaacagtgagaccagtgagaacagtaagagggaacagtgagaacagtaagagggaacagtgagaccagtgagaacagtaagagggaacagtgagaacagtaagagggaacagtgagaccagtcagagggaacagtgagaccagtgagaacagtaagagggaacagtgagaccaGTGAGAGGGAACAGTGAGTCGTGTTCAGCACATTCCACAGTGCCTGGCTAAACAGAGCTAAATGGAGTGGGGATTAAAAAAGGAGCCTGTCTCTAAGTGAGTTTACTCAGTAATTACACGTAATAGCAGGTCATTAGGGTTTGATTAATATGTGGTTTTATTGTGGTGCTCGTCGGGAGTGGGTAACGTATACTCTGCAACTCTGGCTGCCTGCTAGGTTCAACTTGAGCTCCTGGCTGCCCTACTTTACTCGTTCTCCCTCTTTATGGCTAGCTTTTGCATTTCTACCAAACGGGACCCTAGTGAATGTACAGTAATCCATCCAAAGCCATGCTCCTTTCACGCctataaaacacagggagtttGTATGACACATGCTGTATCGCGTGTTACACTGTTTGACTGAGACTTAGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2538619 lncRNA downstream 86066 27658875 ~ 27662316 (-) True G2219490
TU2538538 lncRNA downstream 217707 27526107 ~ 27530675 (-) True G2219420
TU2538451 lncRNA downstream 304738 27443263 ~ 27443644 (-) True G2219346
TU2537736 lncRNA downstream 328100 27357687 ~ 27420282 (-) True LOC110521644
TU2537637 lncRNA downstream 421069 27327104 ~ 27327313 (-) True G2218619
TU2538684 lncRNA upstream 30245 27785250 ~ 27785613 (-) True G2219552
TU2538720 lncRNA upstream 61493 27816498 ~ 27817067 (-) True G2219576
TU2538723 lncRNA upstream 65041 27820046 ~ 27820281 (-) True G2219579
TU2538744 lncRNA upstream 94291 27849296 ~ 27849512 (-) True G2219596
TU2538746 lncRNA upstream 95624 27850629 ~ 27850957 (-) True G2219598
XM_021599351.2 mRNA downstream 35028 27685359 ~ 27713354 (-) False LOC110521652
XM_021599344.2 mRNA downstream 183169 27562219 ~ 27565213 (-) True LOC110521649
XM_021599341.2 mRNA downstream 188418 27544152 ~ 27559964 (-) True LOC110521648
XM_021599336.2 mRNA downstream 290819 27446045 ~ 27457563 (-) True LOC110521645
XM_021599333.2 mRNA downstream 291289 27446045 ~ 27457093 (-) False LOC110521645
XM_021599386.2 mRNA upstream 102129 27857134 ~ 27915693 (-) False LOC110521657
XM_021599379.2 mRNA upstream 102129 27857134 ~ 27915696 (-) False LOC110521657
XM_021599377.2 mRNA upstream 102129 27857134 ~ 27915697 (-) False LOC110521657
XM_021599372.2 mRNA upstream 102129 27857134 ~ 27926105 (-) False LOC110521657
XM_021599373.2 mRNA upstream 102129 27857134 ~ 27926105 (-) False LOC110521657
TU2537466 other downstream 567994 27173253 ~ 27180388 (-) True LOC110521640
TU2537095 other downstream 857771 26888889 ~ 26890611 (-) True G2218118
TU2536765 other downstream 1406887 26268346 ~ 26341495 (-) True G2217824
TU2536746 other downstream 1510984 26236685 ~ 26237398 (-) True G2217805
TU2536525 other downstream 1828505 25917354 ~ 25919877 (-) True G2217605
TU2538742 other upstream 89869 27844874 ~ 27845401 (-) True G2219594
TU2538750 other upstream 108399 27863404 ~ 27864068 (-) True G2219602
TU2538944 other upstream 618291 28373296 ~ 28382275 (-) True lnx1
TU2540472 other upstream 1713638 29468643 ~ 29473675 (-) True G2221180
TU2542873 other upstream 3519715 31274720 ~ 31275143 (-) True G2223487

Expression Profile