RNA id: TCONS_00005416


Basic Information

Item Value
RNA id TCONS_00005416
length 1140
RNA type mRNA
GC content 0.36
exon number 1
gene id XLOC_002932
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36230602 ~ 36231741 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACACAAAGACCCAGAGAGCAGGTATCATGAGCTTCATACAGTCAAACTCTTCTGCAAACGAGACCTTTGTTCGTCCTGCAACATTTTTCCTCAGTGGCCTTTCTAATGTTCCACATGCAAAATACTACTATGTGTtcttgtctttagtgtatgttgCTACTGTTTTGGGAAATTCATTTATCATGTGTGTGATTTATATGTCTCGCAGACTTCACACAGCCAAATACATTGTTGTTTTCCATCTGGCCTTTTCTGATCTGTGTGGAAGCTCGACTGTGATTCCAAATGTTatagatacatttttatttgaccaCCAGGAGATTTCGTATGAAGCATGTTTggcaaacacattttttacatATCATTTTATGAATCTGCAGTCTTTAACGCTACTTGTCATGGCTTATGACAGACTGGTTGCTATTTGTTTTCCTCTGCAGTATCATGCCATTGTAACCAATGCAGCAATGTTTTCGATCCTAGGAGGGATGTGGATTTTTTCTGTGAcacatttttctgtatttgtAGGATTGCTAAATAGACTTTCTTTTTGTAAATCTAATGTGATCGATAGTTATTTTTGCGATTACAGCCTGATCAATAGACTAGCTTGTAATGATAACTCTGTGAATATTATGATGGTAAAAATTAACTTTGGTCTTCTGATCTGTACGCCACTCATACTGATCTTCATTTCATATTTCTGCATTTCTTTAGCTTTGTTTAAGATTGCTCATGGTGTTGATCGAGCCAAAGCCATAAAAACCTGCACCTCACATCTCATGTTGGTGgcaatattttttattccatttttaaGTAATCAAATTGCAATTTTGACAACATCAGTCCACCTAAACACACGGTTAATTAACAGTTCCCTGACACAGGCAATACCACCTATGCTGAATCCCATCATATACACTCTAAAGACTGATGAGGTCATGCAGTCCGTAAAAGAACTATACAAAAGAAAAGTGAACACAACTACTGAAAGAAGAATGAAATGGAACAGTAGAAACTCTAAACAAAAAATACAGGTTTAAAGTTATTATCAGCTGAAAAATCAGTTGAGTTGATTGATTAAATGTCAGATGATGTAACAAATCTGTGTTGTACATTTGTAAATCTCTGAGCTAAAAC

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070804-5 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000170641

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006096 lncRNA downstream 137069 35811752 ~ 36093533 (-) False XLOC_002925
TCONS_00006095 lncRNA downstream 137069 35811752 ~ 36093533 (-) True XLOC_002925
TCONS_00006094 lncRNA downstream 137109 35811752 ~ 36093493 (-) False XLOC_002925
TCONS_00006093 lncRNA downstream 137109 35811752 ~ 36093493 (-) False XLOC_002925
TCONS_00006092 lncRNA downstream 266201 35811752 ~ 35964401 (-) False XLOC_002925
TCONS_00006097 lncRNA upstream 233602 36465343 ~ 36469895 (-) True XLOC_002939
TCONS_00006098 lncRNA upstream 363639 36595380 ~ 36610901 (-) True XLOC_002942
TCONS_00006099 lncRNA upstream 410425 36642166 ~ 36650904 (-) True XLOC_002944
TCONS_00005434 lncRNA upstream 422456 36654197 ~ 36662600 (-) False XLOC_002945
TCONS_00006100 lncRNA upstream 422456 36654197 ~ 36662611 (-) True XLOC_002945
TCONS_00005415 mRNA downstream 4873 36224470 ~ 36225729 (-) True XLOC_002931
TCONS_00005414 mRNA downstream 7597 36221505 ~ 36223005 (-) True XLOC_002930
TCONS_00005413 mRNA downstream 10541 36217239 ~ 36220061 (-) True XLOC_002929
TCONS_00005412 mRNA downstream 16020 36212575 ~ 36214582 (-) True XLOC_002928
TCONS_00005411 mRNA downstream 22865 36205211 ~ 36207737 (-) True XLOC_002927
TCONS_00005417 mRNA upstream 3244 36234985 ~ 36236610 (-) True XLOC_002933
TCONS_00005418 mRNA upstream 6240 36237981 ~ 36240806 (-) True XLOC_002934
TCONS_00005419 mRNA upstream 11150 36242891 ~ 36244864 (-) True XLOC_002935
TCONS_00005420 mRNA upstream 20246 36251987 ~ 36254445 (-) False XLOC_002936
TCONS_00005421 mRNA upstream 21261 36253002 ~ 36253958 (-) True XLOC_002936
TCONS_00005410 other downstream 67308 36163179 ~ 36163294 (-) True XLOC_002926
TCONS_00005408 other downstream 576248 35654245 ~ 35654354 (-) True XLOC_002923
TCONS_00005406 other downstream 610153 35620333 ~ 35620449 (-) True XLOC_002922
TCONS_00005403 other downstream 843360 35369837 ~ 35387242 (-) True XLOC_002918
TCONS_00005381 other downstream 1238188 34984618 ~ 34992414 (-) False XLOC_002907
TCONS_00005427 other upstream 255877 36487618 ~ 36502331 (-) True XLOC_002940
TCONS_00005438 other upstream 449911 36681652 ~ 36682514 (-) True XLOC_002946
TCONS_00005456 other upstream 1120739 37352480 ~ 37357303 (-) True XLOC_002957
TCONS_00005460 other upstream 1819911 38051652 ~ 38051766 (-) False XLOC_002962
TCONS_00005461 other upstream 1840336 38072077 ~ 38072168 (-) True XLOC_002963