RNA id: TCONS_00005421


Basic Information

Item Value
RNA id TCONS_00005421
length 957
RNA type mRNA
GC content 0.38
exon number 1
gene id XLOC_002936
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36251987 ~ 36254445 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAATGATTTCGCCGAAAACAGGAATATTTCTATTCCGTCTTACTTCTACATCAGTGGTTTTTCTGGTATACCTCACATGAGATACTATTACATATTCTTgtcttttgtttacattatttcttTCCTTGGAAACTCCTGTCTCATGTTTGTCATTATCATAGACCGTAATCTTCACACTGCTAAATATATTGCTGTCTTTAATTTATCACTGTCAGACATTTGCGAGAGTACAGCTGTAATCCCTCAGCTACTGGACACTTTTCTGTTTAGAAATCAGTTGATCCCGTATAGATTGTGTTTGTATAATATGTTTTCTGTCTTTGTATCTATTTCAACACAGTCACTAACTCTTGCTGTTCTGTCTTTTGACAGATTAGTAGCTATTTGCTTACCACTGAGATATCATATGATCGTGACCTTTAGATCGATGCTTGTAATAATTGGACTGACATGGGCACTGACATTGCTTATGGTAATGACTGCAACTATTTTTATAAGCAGACTTTCTTTCTGCAAAGTAATTGTCACTGTGAACAGTTTCTACTGTGATCATGGGCCGATATATCGCTCTGCCTGTAGCAATAATTTTCCAAGCTCTGTCATAGGCAGTTTGTACCCAATAGTGATTCTTGGGTTGCCAGTGTTTTTCATCATCTTTTCATATACTTGCATAGCTGTGACACTGTTCAGAGTCACAACTCCACAAGACCGTCAGAGAGCCACAAAGACATGCACTGCTCATTTAATATTAGTGGCTGTATTTTACCTTCCCATCACTATTACATATTCTCTGGCATCCATTATAAACACCAACACAAGGATCATTAATCTCTCTCTGACCTCTGCCCTGCCTCCAATGCTTAACCCTATCATCTACACGTTCAAAACAGAGGAGTTCATGGTGTCTGTGAAAAAGCTTCTGAAACGGAAAATCATATTCCCATATCTAAAATAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-76 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000126288

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006096 lncRNA downstream 159469 35811752 ~ 36093533 (-) False XLOC_002925
TCONS_00006095 lncRNA downstream 159469 35811752 ~ 36093533 (-) True XLOC_002925
TCONS_00006094 lncRNA downstream 159509 35811752 ~ 36093493 (-) False XLOC_002925
TCONS_00006093 lncRNA downstream 159509 35811752 ~ 36093493 (-) False XLOC_002925
TCONS_00006092 lncRNA downstream 288601 35811752 ~ 35964401 (-) False XLOC_002925
TCONS_00006097 lncRNA upstream 211385 36465343 ~ 36469895 (-) True XLOC_002939
TCONS_00006098 lncRNA upstream 341422 36595380 ~ 36610901 (-) True XLOC_002942
TCONS_00006099 lncRNA upstream 388208 36642166 ~ 36650904 (-) True XLOC_002944
TCONS_00005434 lncRNA upstream 400239 36654197 ~ 36662600 (-) False XLOC_002945
TCONS_00006100 lncRNA upstream 400239 36654197 ~ 36662611 (-) True XLOC_002945
TCONS_00005419 mRNA downstream 8138 36242891 ~ 36244864 (-) True XLOC_002935
TCONS_00005418 mRNA downstream 12196 36237981 ~ 36240806 (-) True XLOC_002934
TCONS_00005417 mRNA downstream 16392 36234985 ~ 36236610 (-) True XLOC_002933
TCONS_00005416 mRNA downstream 21261 36230602 ~ 36231741 (-) True XLOC_002932
TCONS_00005415 mRNA downstream 27273 36224470 ~ 36225729 (-) True XLOC_002931
TCONS_00005422 mRNA upstream 5090 36259048 ~ 36260490 (-) True XLOC_002937
TCONS_00005423 mRNA upstream 109360 36363318 ~ 36406562 (-) False XLOC_002938
TCONS_00005424 mRNA upstream 115103 36369061 ~ 36406344 (-) True XLOC_002938
TCONS_00005425 mRNA upstream 221902 36475860 ~ 36547128 (-) False XLOC_002940
TCONS_00005426 mRNA upstream 222291 36476249 ~ 36547128 (-) False XLOC_002940
TCONS_00005410 other downstream 89708 36163179 ~ 36163294 (-) True XLOC_002926
TCONS_00005408 other downstream 598648 35654245 ~ 35654354 (-) True XLOC_002923
TCONS_00005406 other downstream 632553 35620333 ~ 35620449 (-) True XLOC_002922
TCONS_00005403 other downstream 865760 35369837 ~ 35387242 (-) True XLOC_002918
TCONS_00005381 other downstream 1260588 34984618 ~ 34992414 (-) False XLOC_002907
TCONS_00005427 other upstream 233660 36487618 ~ 36502331 (-) True XLOC_002940
TCONS_00005438 other upstream 427694 36681652 ~ 36682514 (-) True XLOC_002946
TCONS_00005456 other upstream 1098522 37352480 ~ 37357303 (-) True XLOC_002957
TCONS_00005460 other upstream 1797694 38051652 ~ 38051766 (-) False XLOC_002962
TCONS_00005461 other upstream 1818119 38072077 ~ 38072168 (-) True XLOC_002963

Expression Profile

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