RNA id: TCONS_00005423


Basic Information

Item Value
RNA id TCONS_00005423
length 2571
RNA type mRNA
GC content 0.43
exon number 6
gene id XLOC_002938
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36363318 ~ 36406562 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ataataatgcaACAAAAATAAGCGGTATATTTCATAATCCACATTTATGActgccatctctctctctctctctctctctctctctctctctctctctctctctctccgcctCTTCCTTTAACTGCTGGGGGGCGTGTATTCATCCGCGCACACACATACCGATCGACATCGCGCCGTTTTTATCTGCCTCAccagctccggtttcccccgttCAGCCCTTTCCCCCGTCAACCACCGCCATGTTTTTCTGAGGCAGGATGACAGCAGAGAGCGAGTGCAGACGAAGACGGATAAAAGACTGAAAAACCGTCGAGTTACAGCATTATTCGACCAGGCGACGGTCTATTTTTTACTGCGGACTCGCGCGGAACTCTTCTCGGATGGGAGGGGGTCCTcccacataaatataaaatccagaaattatcaTTTCCTTGAAGTTTATACCATGAAAAAGCAAGAAGTGAGAAGCATTTCTGAAGAAGAAGCGATTCCTGTCTGCTTTTAACTACCTCTACTGGCGAACATACAGGAATAACCAGACGGGCGATCAACTGCTTTACCACAAGTCACCTGCTGTCAAAACTTTGTTTCTTAAAGCAAACTAGAccgaagaaaaaagaaactaccTTTAATCTAAAGTGAATAGAGCACATTTCAAAGATGACGGGCAACATCCCTGTTGACATGatCAACTTGAGGCTCATCTTGGTGAGTGGAAAAACAAAAGAGTTCCTGTTCTCTCCAAACGACTCGGCGGCCGACATCGCCAAGCACGTGTATGACAACTGGCCAATGGACTGGGAGGAGGAACAAGTAAGCAGCCCGAACATCGTGCGTCTCATCTATCAGGGCCGATTCCTACACGGCAATGTGACGCTAGGAGTTTTAAAACTGCCTCTCGGAAAAACCACAGTGATGCATTTAGTTGCCAGAGAGACGCTGCCCGAGCCAAATTCCCAAGgtCAGAGGAACCGGGAAAAGACTGGAGAGAGCAACTGTTGTGTGATCCTGTAAATGCGTCCCTTCATCCCTCTGAATGAGTGTGTCCCGTCACCCACCGCCCGAAGCTGCTTAAACAACTACTCACACCAGACTAGCAAGAGCcggagagaaaaacacacacacgcagatcTGAGATTCAAGCCAAAAGATGATCATCCAACCTGGAGAGCAGCATATAATAAAAGCGTCccgccttcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactatctctAACACCTTCAAGAACtcattgaaacacaccttttctaACACCTCCATGAactcactgaaacacacacacacacacacacagcttcttcTGCCGGTTTGCACATGGAGGAGGCCCTTGTTGATCAGTTTTTTATTGCACATAGTAAACATGAATGATTCAGTGAGGATGAAGAGACTCCAGGCCCTCCATTTCTTCCTCTCAGGAGGGAAGAATGAATTTACACAGGGTCTGATGAACTTTTCACGTTTAACAGCGCAACCGCTGCAGAGGAGATGCATGAAATACTAGCACACGCTTCACCGGCGGACTGTTCTGGTGAAGTGCTAAGCAGTGTCTGTCCAGGAGAACAAGTATTGATGTGCCTGATGATGAACGCTCGAGAAATGTTTCTGGTTTGGATGGCCCTTTTTAATCCTGGAGATTGCTGAAACGTTGATTTGCAGGAGGGCGGATCTCCGGACGTCTGCTTGGAAAGTCTAAATAACACGTAATGAATAACTAATAACATTTGCGACTGTGTTTTGACAGTCATCCAGTGTTTTCTTTAGATTGATCGGAGCTGCTCTCTTTTTTAGGAAGGGTCCGACTATCCCTTTATTTCCCCCTCCCAAGCGTAGTTGGTGTAAATTAATGCTTGCGTTTGGAGCCAGAAGAAATCTGTGGAATGAAGTTTGGCTTGGTTTCTATTTCTCCCTACTTTttagatatatataaaaattgtttGCACAAGACAGAAACGTGAGCTGTTTCATTTCTAAATCGGTGtcaatttttttctttccccTTGTTTTTCCAAATGGGAACCGTATTGGAAGGTTACATACGTGTAGAGTATATTTAATATGAATCTTATAGAGAACATAACTATAGATTGTTGATATATATTGGTGTCTAGTGTATGATAGTTTTAAACAGTTAGCACATTAGCATTCGGAGCAGTGAGACGCTGACTATGTCATGTACTTTAACAGCAGCAACCCCCTCTCTAATGGTTGAAGAAATTACTGTACCGtgtttttgttatcattattttttttttaaatgttcataatTTGATATAATCTTCCTTTTCTTTGTATGTGGTCTTTGCTTTTCTGCTTTTTAACACCGCACTCGGTCTGAAAAATATTGGTCCTTATCAGGGTTTAAATCTGTACAGAGCTGAAGTTTTTAAAAAGATAATTGTAAATAAAACTAATGCTTCTCATTCTCTAAAATACAAATGGAAATACATCTATAAACTGAATAAAGAATCCAGATTATTCAA

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3431 Predicted to be located in plasma membrane. Orthologous to human UBL3 (ubiquitin like 3).

Ensembl:

ensembl_id ENSDART00000160468

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006096 lncRNA downstream 269785 35811752 ~ 36093533 (-) False XLOC_002925
TCONS_00006095 lncRNA downstream 269785 35811752 ~ 36093533 (-) True XLOC_002925
TCONS_00006094 lncRNA downstream 269825 35811752 ~ 36093493 (-) False XLOC_002925
TCONS_00006093 lncRNA downstream 269825 35811752 ~ 36093493 (-) False XLOC_002925
TCONS_00006092 lncRNA downstream 398917 35811752 ~ 35964401 (-) False XLOC_002925
TCONS_00006097 lncRNA upstream 58781 36465343 ~ 36469895 (-) True XLOC_002939
TCONS_00006098 lncRNA upstream 188818 36595380 ~ 36610901 (-) True XLOC_002942
TCONS_00006099 lncRNA upstream 235604 36642166 ~ 36650904 (-) True XLOC_002944
TCONS_00005434 lncRNA upstream 247635 36654197 ~ 36662600 (-) False XLOC_002945
TCONS_00006100 lncRNA upstream 247635 36654197 ~ 36662611 (-) True XLOC_002945
TCONS_00005422 mRNA downstream 102828 36259048 ~ 36260490 (-) True XLOC_002937
TCONS_00005420 mRNA downstream 108873 36251987 ~ 36254445 (-) False XLOC_002936
TCONS_00005421 mRNA downstream 109360 36253002 ~ 36253958 (-) True XLOC_002936
TCONS_00005419 mRNA downstream 118454 36242891 ~ 36244864 (-) True XLOC_002935
TCONS_00005418 mRNA downstream 122512 36237981 ~ 36240806 (-) True XLOC_002934
TCONS_00005425 mRNA upstream 69298 36475860 ~ 36547128 (-) False XLOC_002940
TCONS_00005426 mRNA upstream 69687 36476249 ~ 36547128 (-) False XLOC_002940
TCONS_00005428 mRNA upstream 152242 36558804 ~ 36591511 (-) False XLOC_002941
TCONS_00005429 mRNA upstream 152253 36558815 ~ 36592486 (-) True XLOC_002941
TCONS_00005430 mRNA upstream 206442 36613004 ~ 36625752 (-) False XLOC_002943
TCONS_00005410 other downstream 200024 36163179 ~ 36163294 (-) True XLOC_002926
TCONS_00005408 other downstream 708964 35654245 ~ 35654354 (-) True XLOC_002923
TCONS_00005406 other downstream 742869 35620333 ~ 35620449 (-) True XLOC_002922
TCONS_00005403 other downstream 976076 35369837 ~ 35387242 (-) True XLOC_002918
TCONS_00005381 other downstream 1370904 34984618 ~ 34992414 (-) False XLOC_002907
TCONS_00005427 other upstream 81056 36487618 ~ 36502331 (-) True XLOC_002940
TCONS_00005438 other upstream 275090 36681652 ~ 36682514 (-) True XLOC_002946
TCONS_00005456 other upstream 945918 37352480 ~ 37357303 (-) True XLOC_002957
TCONS_00005460 other upstream 1645090 38051652 ~ 38051766 (-) False XLOC_002962
TCONS_00005461 other upstream 1665515 38072077 ~ 38072168 (-) True XLOC_002963

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU225606 False 2811 TUCP 0.43 5 NC_053127.1 18516783 ~ 18550810 (-)
bowfin (Amia calva) TU14381 True 2436 TUCP 0.43 5 CM030122.1 9559464 ~ 9591649 (+)
tiger barb (Puntius tetrazona) TU14381 False 2151 lncRNA 0.37 3 NC_056700.1 5577466 ~ 5591587 (+)