Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00005426 |
| length | 9367 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 47 |
| gene id | XLOC_002940 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 36475860 ~ 36547128 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006302 | double-strand break repair | biological_process |
| GO:0007507 | heart development | biological_process |
| GO:0003146 | heart jogging | biological_process |
| GO:0070550 | rDNA condensation | biological_process |
| GO:1990414 | replication-born double-strand break repair via sister chromatid exchange | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0070050 | neuron cellular homeostasis | biological_process |
| GO:0048565 | digestive tract development | biological_process |
| GO:0071921 | cohesin loading | biological_process |
| GO:0048589 | developmental growth | biological_process |
| GO:0010468 | regulation of gene expression | biological_process |
| GO:0007049 | cell cycle | biological_process |
| GO:0071169 | establishment of protein localization to chromatin | biological_process |
| GO:0007064 | mitotic sister chromatid cohesion | biological_process |
| GO:0035118 | embryonic pectoral fin morphogenesis | biological_process |
| GO:0007076 | mitotic chromosome condensation | biological_process |
| GO:1905406 | positive regulation of mitotic cohesin loading | biological_process |
| GO:0034087 | establishment of mitotic sister chromatid cohesion | biological_process |
| GO:0003007 | heart morphogenesis | biological_process |
| GO:0071733 | transcriptional activation by promoter-enhancer looping | biological_process |
| GO:0007417 | central nervous system development | biological_process |
| GO:0007420 | brain development | biological_process |
| GO:0048703 | embryonic viscerocranium morphogenesis | biological_process |
| GO:0060828 | regulation of canonical Wnt signaling pathway | biological_process |
| GO:0000785 | chromatin | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0090694 | Scc2-Scc4 cohesin loading complex | cellular_component |
| GO:0000228 | nuclear chromosome | cellular_component |
| GO:0003682 | chromatin binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-6070 | Enables chromatin loop anchoring activity. Acts upstream of or within several processes, including embryonic morphogenesis; neuron cellular homeostasis; and regulation of canonical Wnt signaling pathway. Predicted to be located in nucleus. Predicted to be part of Scc2-Scc4 cohesin loading complex. Is expressed in several structures, including Kupffer's vesicle; blastoderm; blastodisc; central nervous system; and lateral plate mesoderm. Used to study Cornelia de Lange syndrome. Human ortholog(s) of this gene implicated in Cornelia de Lange syndrome 1. Orthologous to human NIPBL (NIPBL cohesin loading factor). |
| ensembl_id | ENSDART00000086861 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00006097 | lncRNA | downstream | 6354 | 36465343 ~ 36469895 (-) | True | XLOC_002939 |
| TCONS_00006096 | lncRNA | downstream | 382716 | 35811752 ~ 36093533 (-) | False | XLOC_002925 |
| TCONS_00006095 | lncRNA | downstream | 382716 | 35811752 ~ 36093533 (-) | True | XLOC_002925 |
| TCONS_00006094 | lncRNA | downstream | 382756 | 35811752 ~ 36093493 (-) | False | XLOC_002925 |
| TCONS_00006098 | lncRNA | upstream | 48252 | 36595380 ~ 36610901 (-) | True | XLOC_002942 |
| TCONS_00006099 | lncRNA | upstream | 95038 | 36642166 ~ 36650904 (-) | True | XLOC_002944 |
| TCONS_00005434 | lncRNA | upstream | 107069 | 36654197 ~ 36662600 (-) | False | XLOC_002945 |
| TCONS_00006100 | lncRNA | upstream | 107069 | 36654197 ~ 36662611 (-) | True | XLOC_002945 |
| TCONS_00005437 | lncRNA | upstream | 132420 | 36679548 ~ 36682522 (-) | False | XLOC_002946 |
| TCONS_00005423 | mRNA | downstream | 69687 | 36363318 ~ 36406562 (-) | False | XLOC_002938 |
| TCONS_00005424 | mRNA | downstream | 69905 | 36369061 ~ 36406344 (-) | True | XLOC_002938 |
| TCONS_00005422 | mRNA | downstream | 215759 | 36259048 ~ 36260490 (-) | True | XLOC_002937 |
| TCONS_00005420 | mRNA | downstream | 221804 | 36251987 ~ 36254445 (-) | False | XLOC_002936 |
| TCONS_00005421 | mRNA | downstream | 222291 | 36253002 ~ 36253958 (-) | True | XLOC_002936 |
| TCONS_00005428 | mRNA | upstream | 11676 | 36558804 ~ 36591511 (-) | False | XLOC_002941 |
| TCONS_00005429 | mRNA | upstream | 11687 | 36558815 ~ 36592486 (-) | True | XLOC_002941 |
| TCONS_00005430 | mRNA | upstream | 65876 | 36613004 ~ 36625752 (-) | False | XLOC_002943 |
| TCONS_00005431 | mRNA | upstream | 65907 | 36613035 ~ 36633882 (-) | False | XLOC_002943 |
| TCONS_00005432 | mRNA | upstream | 68830 | 36615958 ~ 36618674 (-) | False | XLOC_002943 |
| TCONS_00005410 | other | downstream | 312955 | 36163179 ~ 36163294 (-) | True | XLOC_002926 |
| TCONS_00005408 | other | downstream | 821895 | 35654245 ~ 35654354 (-) | True | XLOC_002923 |
| TCONS_00005406 | other | downstream | 855800 | 35620333 ~ 35620449 (-) | True | XLOC_002922 |
| TCONS_00005403 | other | downstream | 1089007 | 35369837 ~ 35387242 (-) | True | XLOC_002918 |
| TCONS_00005381 | other | downstream | 1483835 | 34984618 ~ 34992414 (-) | False | XLOC_002907 |
| TCONS_00005438 | other | upstream | 134524 | 36681652 ~ 36682514 (-) | True | XLOC_002946 |
| TCONS_00005456 | other | upstream | 805352 | 37352480 ~ 37357303 (-) | True | XLOC_002957 |
| TCONS_00005460 | other | upstream | 1504524 | 38051652 ~ 38051766 (-) | False | XLOC_002962 |
| TCONS_00005461 | other | upstream | 1524949 | 38072077 ~ 38072168 (-) | True | XLOC_002963 |
| TCONS_00005463 | other | upstream | 1527184 | 38074312 ~ 38074391 (-) | True | XLOC_002962 |
