RNA id: TCONS_00059929


Basic Information

Item Value
RNA id TCONS_00059929
length 2042
RNA type mRNA
GC content 0.45
exon number 10
gene id XLOC_030792
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 5171254 ~ 5243111 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTTTTAGAAGCGGCAGTTTCTGAGGACCCCTAAACCACCCTGACGACAAACGGAGAAATGCGCCGTTTAAAATGGATTAATTCTTTACCGGGAACATCAGCAGTCCATCCGTGAGCCGTAAAGACAGACAGAAGAGGAACCAGTGGCGTAAATCTTGTTTAACCGCAGCGTCTGTCTATCACTGTGAAGTGTGTTTGTTGGGAATTCCTCCATGATGCCTGAGGTACGGGACCTTTCAGATGCCCTACCAGAGATGCCCATGGACCCCATCACCGGCGTAGGGGTTGTGGCCTCAAGAAACAGAGCTCCTACCGGCTATGATGTGGTTGCACAGACCACAGATGGGATTGACGCAGACTTGTGGAAAGATGGTCTGTTCAAATCCAAGGTGACCCGCTATCTGTGCTTCACCAGGGCATTTTCCAAAGAGAATAGTCATTTAGGAAACGTGCTTGTAGACATGAAGCTCATCGACATCAAGGACACGCTGCCTGTGGGATTCATTCCCATTCAGGAAACCGTGGACACACAAGAGCCGGCGTTCAGGAAGAGGAGGTTATGCATTAAGTTCATCCCGAGAGACTCCACTGAAGCCGCCATCTGTGACATCCGCATTTTAGGACGCTCGAAACAGGCTCCACCACAGTACACCTTCATAGGAGAGCTGAACAATATGGGCATCTGGTACCGCATGGGGAAAGTGCCACGGACCCAAGACTCTTCACCTGTACAGAACAACTCCAGCAACAACACCACCAATAACATCCAGACGCTCACCAACAACTCCACTCCAGCGCCAGTCTTGcccaaGCACATATCCATGACGCTGCCCGCATGTTTCAGAAAAAGCACAACCAGACCAGACTTTGAACACCAGAACTCCAACCTCTATGCCATTTCTGCGATGGATGGAGTGCCTTTCATGATTTCTGAGAAGTTTGCAAGTGCCTCCACTGATtTGCAGCAGGTGGATCTAATGGGCATCAGAATTAAATCACTTGCAGAGATTGAGAAGGAGtATGAATATAGTTTCCGGACGGAGCACAGTGCTGCGGCGCGTCTGCCACCCAGTCCAACCAGAACATCTCTGGGCTCCGAGGCCTAacgttcacaaaaaaaaaaccctgatctGAGCACAGACTCTCTGAGGTCAAAACAGAAACCTGCAACAAGTCTGACGGAGGGGGAACATAATAAGATACTGTTTGCTTCTCTCTGTGAACAAAATTAACAAGTATCATTTGATGTGGTCAAGTCTCTCTTAAGTTGATGCTCCTTTTTATTGTTTGGTAAAGAGCTTCTGATGCTACCCCGATCAAACCCAAACCACTACAGTGTCATCTGAAAGGATGGAAACAGACTCGATTTCTGTTATTATGCAACAAGTATTGTGTATTCAGACTTTTCTGGCTGCTGGATTGAGATGCTGTTACTATTGTGGGTTCTTATTAAGGGTCGGACTTGGACAAACCCTTAGGAATTCACAATTGAGTTCATGCGTCAAGTGCATGGATCAGAAGAGTTCCATTTGTTTGCTTCTGTTTCATTTAGATCGCAGTgactgcatgtttattttttttttcactttttttttctggattggttTGGAAATGGAGCCCAATTCACTGCACTGTTACAGGACTGAAGCGTTTTAATGTGTTCGTGTTTTGTCTGGAAAAAGAGATTCGAACAAAACACTCCGACTCTGAACGAACCCTTGTACATATAGACAGTCGAGGAATCCGGAGCGCGACTTTTTAGCattgtgtgttttctgttttcGTCTGTGTAATGTCTGATCTATCTCTCCGCTTACCATTGGTCAAGATTTACTGAGATTTTACTTGTTTTCAGTCTCATGTTAGGATTTTCAGTGGCGCTCGTGCACTGGTCCGTTTGTGGCTTCCGAAGTTCATGGTGATATTTttgtgaatttagtttttttttatcattattaacaaGTGAAAATGTCTGCAGGATTTATTTCCCTTCAAAATATGAAGaaaaaatgagaaattaaaaGTAGCATTGAGAAAACAAA

Function

GO:

id name namespace
GO:0019075 virus maturation biological_process
GO:0046755 viral budding biological_process
GO:0042058 regulation of epidermal growth factor receptor signaling pathway biological_process
GO:0005770 late endosome cellular_component
GO:0000813 ESCRT I complex cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-372 Predicted to be involved in regulation of epidermal growth factor receptor signaling pathway; viral budding; and virus maturation. Predicted to act upstream of or within protein transport. Predicted to be located in late endosome membrane. Predicted to be part of ESCRT I complex. Predicted to be active in late endosome. Orthologous to human MVB12B (multivesicular body subunit 12B).

Ensembl:

ensembl_id ENSDART00000130576

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061925 lncRNA downstream 13081 5156399 ~ 5158173 (-) True XLOC_030791
TCONS_00061924 lncRNA downstream 263644 4864870 ~ 4907610 (-) True XLOC_030787
TCONS_00059921 lncRNA downstream 437112 4714732 ~ 4734142 (-) True XLOC_030786
TCONS_00059920 lncRNA downstream 473887 4689462 ~ 4697367 (-) True XLOC_030785
TCONS_00059919 lncRNA downstream 480126 4685675 ~ 4691128 (-) False XLOC_030785
TCONS_00061926 lncRNA upstream 55782 5298861 ~ 5301748 (-) True XLOC_030793
TCONS_00061927 lncRNA upstream 256724 5499803 ~ 5502345 (-) False XLOC_030795
TCONS_00061929 lncRNA upstream 256724 5499803 ~ 5504301 (-) False XLOC_030795
TCONS_00061928 lncRNA upstream 256724 5499803 ~ 5504301 (-) False XLOC_030795
TCONS_00061930 lncRNA upstream 256724 5499803 ~ 5504425 (-) True XLOC_030795
TCONS_00059925 mRNA downstream 23918 5032833 ~ 5147336 (-) False XLOC_030790
TCONS_00059926 mRNA downstream 24034 5035465 ~ 5147220 (-) False XLOC_030790
TCONS_00059928 mRNA downstream 24213 5035526 ~ 5147041 (-) True XLOC_030790
TCONS_00059927 mRNA downstream 135571 5035499 ~ 5035683 (-) False XLOC_030790
TCONS_00059922 mRNA downstream 239988 4921092 ~ 4931266 (-) False XLOC_030788
TCONS_00059931 mRNA upstream 59853 5302932 ~ 5394468 (-) False XLOC_030794
TCONS_00059932 mRNA upstream 66416 5309495 ~ 5394335 (-) False XLOC_030794
TCONS_00059933 mRNA upstream 68914 5311993 ~ 5394335 (-) False XLOC_030794
TCONS_00059934 mRNA upstream 70764 5313843 ~ 5326010 (-) True XLOC_030794
TCONS_00059935 mRNA upstream 371541 5614620 ~ 5655839 (-) True XLOC_030796
TCONS_00059924 other downstream 228542 4942598 ~ 4942712 (-) True XLOC_030789
TCONS_00059909 other downstream 944634 4223515 ~ 4226620 (-) False XLOC_030776
TCONS_00059873 other downstream 2958466 2212672 ~ 2212788 (-) True XLOC_030748
TCONS_00059869 other downstream 3208845 1962282 ~ 1962409 (-) True XLOC_030744
TCONS_00059868 other downstream 3211054 1960073 ~ 1960200 (-) True XLOC_030743
TCONS_00059943 other upstream 1287988 6531067 ~ 6531182 (-) True XLOC_030808
TCONS_00059948 other upstream 1685955 6929034 ~ 6929148 (-) True XLOC_030810
TCONS_00059949 other upstream 1905212 7148291 ~ 7148407 (-) True XLOC_030811
TCONS_00059951 other upstream 2188346 7431425 ~ 7431523 (-) True XLOC_030814
TCONS_00059954 other upstream 2389616 7632695 ~ 7632819 (-) True XLOC_030816

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000337_00562941_00572696.mRNA True 1143 mRNA 0.48 7 CI01000337 562794 ~ 572696 (-)