RNA id: TCONS_00059922


Basic Information

Item Value
RNA id TCONS_00059922
length 1586
RNA type mRNA
GC content 0.51
exon number 2
gene id XLOC_030788
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 4921092 ~ 4931266 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAACCGGTCTAAAACGATGCAGGAAACGAGCGTCTAGACTTTGACGTCACCATGGAGGCTGATGCAAACTCCTTCCACGTGGAGTTCCCGGATTTCTCCTGCTCGCTCCTGAAGAAACTGAACCAGCAGAGGCAGCGTGGCCAGCTCTGCGACCTCATCGTGTCCATCGGCGGCCATCAGTTTCGCGCCCACCGCGCCGTCCTGGCCGCAAGCTCGCCGTACTTCTGCGATCAGGTGCTTCTGAAGAACAGCGCTCGCGTGGTGCTCCCGGACGTCATGCCTCCGTGCGTTTTCGAGCAGCTCCTCTTATCCTGCTACACCGGAGGACTTTCGGTGCCGTCTGGAGAAGTGGTGTCCTTTCTTACAGCCGCCAGTTTTTTACAGATGTGGCATGTGGTGGATAAATGCACCGAGCTACTGGAGGTTGGAAACAAGAAAAACAGCAGCGGAGGGAACTTCGAGCACAGCTCATCCCCGAAATGTGACGTGTACGAGGATAATATTGAAGATCTAGTGGATGATGGCATTACTATTCCTGCCTTGGAAAGCGCCGGATGCTCGTCTCCTGATGCGCAGAGCAGCGAGAATGGATCGGACGCAATGGAAAGCCACTGCTCTAGACCCGCGTATGTGCCGCCGAGCATCATGGGACATCGAAAGAAGGTGCACGTTAAAGCGGAAAGGCAAACTCGGGAAGCCTGCGGTGGGTTGTTTGGCTCAGAACACACTGCGAATGATTCTGACGAAAACAACGGCAACACCGTCGAAGATTGTTTCGACGAGAAGTTAACAGAGTGTCTGGATCGGGATTGCACTTATGAAGAGCCTCTGGATTTCTACGGGAGCTCCATGGAGGGGTTTTCTCAAACCGGAGACGAGCTTTCTAATCCAGAGTCCAAGGAGAAACTTCAGGCGGATGGGAATAATACAGATGGTCCTAAAGATGAATCTCCTGCCGACAGTGAGCAGACGTCCCACTCAGGGTTTGCATCGGTGGTTTATAAGCTGTATCCGTGTCAGTGCGGCAAAAGCTTCACGCATAAAAGTCAAAGGGACCGGCATATGAGCATGCATCTGGGTCTGAGGCCGTTCGGTTGTGCCGTCTGTGGAAAGAGCTTTAAGATGAAGCATCACCTGGTGggtcacatgaagatccacacggGGATTAAACCGTACGAGTGCAGCTTGTGCTCCAAGCGCTTCATGTGGAGGGACAGCTTCAACCGGCACACCTCCACCTGCGCCAAAGCCCATCAGACCCGACGGGCCTCGCAGACCTGCTAGTGTTCATACAATTACCAGAATGccaaacagattttaaaaacaaGCACCTCAGTTTTGAACAGTGAGTTCGGTTTAGTTTAGTTGTTCAGGTGTACACTGCTAGTCAGAGGTTTGGGTTAATTATGTGATTTAAAAAAGTctcttatgtatttttttgtatcgAGTTTGGTACCAATTGgtaatgaaattttaaaaacgtccatttcccgctaacatttgggCGATGTTGAATGCGTTCTAAACACCGCTGATTTGCCTTtagctgcgtccaaaaccgcctattcaataggtactgcatttg

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
ko03000 Transcription factors
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-060526-378 Predicted to enable RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZBTB43 (zinc finger and BTB domain containing 43).

Ensembl:

ensembl_id ENSDART00000067600

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061924 lncRNA downstream 13482 4864870 ~ 4907610 (-) True XLOC_030787
TCONS_00059921 lncRNA downstream 186950 4714732 ~ 4734142 (-) True XLOC_030786
TCONS_00059920 lncRNA downstream 223725 4689462 ~ 4697367 (-) True XLOC_030785
TCONS_00059919 lncRNA downstream 229964 4685675 ~ 4691128 (-) False XLOC_030785
TCONS_00061923 lncRNA downstream 247227 4670271 ~ 4673865 (-) True XLOC_030784
TCONS_00061925 lncRNA upstream 225133 5156399 ~ 5158173 (-) True XLOC_030791
TCONS_00061926 lncRNA upstream 367595 5298861 ~ 5301748 (-) True XLOC_030793
TCONS_00061927 lncRNA upstream 568537 5499803 ~ 5502345 (-) False XLOC_030795
TCONS_00061929 lncRNA upstream 568537 5499803 ~ 5504301 (-) False XLOC_030795
TCONS_00061928 lncRNA upstream 568537 5499803 ~ 5504301 (-) False XLOC_030795
TCONS_00059916 mRNA downstream 388576 4523633 ~ 4532516 (-) True XLOC_030781
TCONS_00059915 mRNA downstream 427590 4482437 ~ 4493502 (-) True XLOC_030780
TCONS_00059914 mRNA downstream 502537 4382378 ~ 4418555 (-) True XLOC_030779
TCONS_00059913 mRNA downstream 623633 4253929 ~ 4297459 (-) True XLOC_030778
TCONS_00059912 mRNA downstream 675906 4235513 ~ 4245186 (-) True XLOC_030777
TCONS_00059925 mRNA upstream 101567 5032833 ~ 5147336 (-) False XLOC_030790
TCONS_00059926 mRNA upstream 104199 5035465 ~ 5147220 (-) False XLOC_030790
TCONS_00059927 mRNA upstream 104233 5035499 ~ 5035683 (-) False XLOC_030790
TCONS_00059928 mRNA upstream 104260 5035526 ~ 5147041 (-) True XLOC_030790
TCONS_00059929 mRNA upstream 239988 5171254 ~ 5243079 (-) False XLOC_030792
TCONS_00059909 other downstream 694472 4223515 ~ 4226620 (-) False XLOC_030776
TCONS_00059873 other downstream 2708304 2212672 ~ 2212788 (-) True XLOC_030748
TCONS_00059869 other downstream 2958683 1962282 ~ 1962409 (-) True XLOC_030744
TCONS_00059868 other downstream 2960892 1960073 ~ 1960200 (-) True XLOC_030743
TCONS_00059866 other downstream 2968314 1952652 ~ 1952778 (-) True XLOC_030742
TCONS_00059924 other upstream 11332 4942598 ~ 4942712 (-) True XLOC_030789
TCONS_00059943 other upstream 1599801 6531067 ~ 6531182 (-) True XLOC_030808
TCONS_00059948 other upstream 1997768 6929034 ~ 6929148 (-) True XLOC_030810
TCONS_00059949 other upstream 2217025 7148291 ~ 7148407 (-) True XLOC_030811
TCONS_00059951 other upstream 2500159 7431425 ~ 7431523 (-) True XLOC_030814

Expression Profile

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