RNA id: TCONS_00065502


Basic Information

Item Value
RNA id TCONS_00065502
length 1115
RNA type mRNA
GC content 0.47
exon number 9
gene id XLOC_033469
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 9290929 ~ 9305581 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gcggtgttttgttttttgtctcgAGAAGAACTAAACAGATACTTCCGTTTGGCGGCAGCGTGTACGAATGTTACACGTTCACAATAAACTTTTGACCAAACACAGTTTTCTCCGCTTAGACTAGTTTCTCTTGTTTTTCTTTGGTCTCTGCGGCGGACATGGTGAAGCTGACGGCGGAGTTGATCGAGCAGGCGGCGCAGTACACGAACCCTGTGCGGGACAGAGAGCTGGATCTGCGCGGCTATAAAATCCCTGTGCTAGAGAATCTGGGCGCCACTCTGGATCAGTTTGATACCATCGATCTGTCGGATAATGAGGTCAGAAAACTGGATGGGTTTCCGCTGCTGAAGAGACTCAAAACGCTGCTGGTGAACAACAACAGAATCTGCCGAATTGGAGAGAACTTGGAGCAGGCTTTACCAGACCTGAAGGAGCTCATTCTCACAAGCAACAACATTCAAGAGCTGGGTGATTTGGATCCTCTTGCCACAGTAAAATCTTTGAGTCTGCTCAGTCTCCTCAGGAATCCAGTTACCAACAAGAAACATTACAGATTATATGTCATCAATAAAATTCCACAGATCCGAGTTCTGGACTTCCAGAAGGTCAAACTGAAGGAACGTCAGGAGGCGGAAAAAATGTTCAAAGGCAAACGCGGTGCTCAGCTTGCAAAGGATATTGCCAAGCAATCCAAAACGTTCACTCCTGGAGCTGGACTGCAAACCGAGAAGAAAACAGGCCCGTCTGCTGCCGAGGTTGAAGCCATCAAGAATGCTATCGCTAATGCTACGTCACTGGCTGAAGTGGAGCGGCTGAAGGGACTCCTGCAGGCTGGACAGATTCCAGGACGAGACCTCAGATCAGGAGCAGGGAACATggtggaggaggaagaagaggaggagatgtCTGAGTCTGTGCCCATGTTTGAGGACATGCAGGGAGAAAACAATGATGAAGACATGCAGGAGGAAATGCATGTGAATGGATCGTAGTTCTGTTCGGTTGTTGATGTTTCAGAATCATTTAATGCCGTTTTGATGCTGTATTTGACAGCACTTGTTTTCAGAAGTGTTGCTTTGTTTGTAAATTTAAAgtacattaaacatttttttatg

Function

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0005686 U2 snRNP cellular_component
GO:0030620 U2 snRNA binding molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-041114-82 Predicted to enable U2 snRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U2 snRNP. Is expressed in female organism. Human ortholog(s) of this gene implicated in connective tissue disease. Orthologous to human SNRPA1 (small nuclear ribonucleoprotein polypeptide A').

Ensembl:

ensembl_id ENSDART00000128530

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068552 lncRNA upstream 227548 9061425 ~ 9063381 (+) True XLOC_033467
TCONS_00068777 lncRNA upstream 450314 8835309 ~ 8840615 (+) False XLOC_033465
TCONS_00068778 lncRNA upstream 450314 8835313 ~ 8840615 (+) False XLOC_033465
TCONS_00068779 lncRNA upstream 450314 8835334 ~ 8840615 (+) True XLOC_033465
TCONS_00065495 lncRNA upstream 664245 8623945 ~ 8626684 (+) True XLOC_033463
TCONS_00068553 lncRNA downstream 250465 9556044 ~ 9556645 (+) True XLOC_033472
TCONS_00068780 lncRNA downstream 747764 10053343 ~ 10054205 (+) True XLOC_033476
TCONS_00068554 lncRNA downstream 1256539 10562118 ~ 10583144 (+) False XLOC_033479
TCONS_00068555 lncRNA downstream 1361892 10667471 ~ 10681656 (+) True XLOC_033481
TCONS_00065526 lncRNA downstream 1396153 10701732 ~ 10800887 (+) False XLOC_033483
TCONS_00065501 mRNA upstream 17606 9189547 ~ 9273323 (+) True XLOC_033468
TCONS_00065499 mRNA upstream 244630 9041174 ~ 9046299 (+) False XLOC_033466
TCONS_00065498 mRNA upstream 245158 9008372 ~ 9045771 (+) False XLOC_033466
TCONS_00065496 mRNA upstream 609747 8670398 ~ 8681182 (+) False XLOC_033464
TCONS_00065494 mRNA upstream 746074 8543317 ~ 8544855 (+) True XLOC_033462
TCONS_00065506 mRNA downstream 3046 9308625 ~ 9322493 (+) True XLOC_033470
TCONS_00065507 mRNA downstream 20655 9326234 ~ 9511298 (+) True XLOC_033471
TCONS_00065508 mRNA downstream 568171 9873750 ~ 9895905 (+) False XLOC_033473
TCONS_00065509 mRNA downstream 568182 9873761 ~ 9887667 (+) False XLOC_033473
TCONS_00065510 mRNA downstream 575232 9880811 ~ 9895804 (+) True XLOC_033473
TCONS_00065500 other upstream 244627 9041175 ~ 9046302 (+) True XLOC_033466
TCONS_00065497 other upstream 609748 8670465 ~ 8681181 (+) True XLOC_033464
TCONS_00065492 other upstream 861010 8428954 ~ 8429919 (+) True XLOC_033460
TCONS_00065484 other upstream 1511753 7778963 ~ 7779176 (+) True XLOC_033454
TCONS_00065483 other upstream 1518551 7772165 ~ 7772378 (+) True XLOC_033453
TCONS_00065516 other downstream 942493 10248072 ~ 10248187 (+) True XLOC_033477
TCONS_00065522 other downstream 1272770 10578349 ~ 10582625 (+) True XLOC_033479
TCONS_00065525 other downstream 1377908 10683487 ~ 10683607 (+) True XLOC_033482
TCONS_00065536 other downstream 1907829 11213408 ~ 11213524 (+) True XLOC_033487
TCONS_00065544 other downstream 2866550 12172129 ~ 12172246 (+) True XLOC_033493

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000343_01368460_01381795.mRNA False 2087 mRNA 0.47 15 CI01000343 1367831 ~ 1381822 (+)
rainbow trout (Oncorhynchus mykiss) TU628061 False 840 TUCP 0.50 9 NC_048570.1 85104196 ~ 85106986 (+)
bowfin (Amia calva) AMCG00007610 True 1358 mRNA 0.44 9 CM030123.1 23831169 ~ 23834638 (-)