Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00065526 |
| length | 1618 |
| lncRNA type | retained_intron |
| GC content | 0.50 |
| exon number | 12 |
| gene id | XLOC_033483 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007118.7 |
| NCBI id | CM002891.2 |
| chromosome length | 74282399 |
| location | 10701732 ~ 10877536 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0071542 | dopaminergic neuron differentiation | biological_process |
| GO:0021536 | diencephalon development | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0048798 | swim bladder inflation | biological_process |
| GO:0021591 | ventricular system development | biological_process |
| GO:0098609 | cell-cell adhesion | biological_process |
| GO:0003208 | cardiac ventricle morphogenesis | biological_process |
| GO:0045893 | positive regulation of transcription, DNA-templated | biological_process |
| GO:0048666 | neuron development | biological_process |
| GO:0021979 | hypothalamus cell differentiation | biological_process |
| GO:0007411 | axon guidance | biological_process |
| GO:0007420 | brain development | biological_process |
| GO:0072576 | liver morphogenesis | biological_process |
| GO:0001666 | response to hypoxia | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0005622 | intracellular anatomical structure | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005667 | transcription regulator complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0046983 | protein dimerization activity | molecular_function |
| id | description |
|---|---|
| ko05200 | Pathways in cancer |
| ko05202 | Transcriptional misregulation in cancer |
| ko05211 | Renal cell carcinoma |
| ko03000 | Transcription factors |
| id | description |
|---|---|
| ZDB-GENE-001207-3 | Enables DNA-binding transcription factor activity. Involved in regulation of transcription, DNA-templated; response to hypoxia; and signal transduction. Acts upstream of or within several processes, including animal organ development; neuron differentiation; and positive regulation of transcription, DNA-templated. Predicted to be located in cytoplasm. Predicted to be part of aryl hydrocarbon receptor complex. Predicted to be active in nucleus. Is expressed in several structures, including gut; hatching gland; mandibular arch skeleton; nervous system; and vasculature. Orthologous to human ARNT2 (aryl hydrocarbon receptor nuclear translocator 2). |
| ensembl_id | ENSDART00000171385 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00068555 | lncRNA | upstream | 20076 | 10667471 ~ 10681656 (+) | True | XLOC_033481 |
| TCONS_00068554 | lncRNA | upstream | 118588 | 10562118 ~ 10583144 (+) | False | XLOC_033479 |
| TCONS_00068780 | lncRNA | upstream | 647527 | 10053343 ~ 10054205 (+) | True | XLOC_033476 |
| TCONS_00068553 | lncRNA | upstream | 1145087 | 9556044 ~ 9556645 (+) | True | XLOC_033472 |
| TCONS_00065504 | lncRNA | upstream | 1396151 | 9299640 ~ 9305581 (+) | False | XLOC_033469 |
| TCONS_00068782 | lncRNA | downstream | 233662 | 11034549 ~ 11035613 (+) | True | XLOC_033485 |
| TCONS_00068783 | lncRNA | downstream | 792914 | 11593801 ~ 11595516 (+) | True | XLOC_033490 |
| TCONS_00065542 | lncRNA | downstream | 888771 | 11689658 ~ 11734096 (+) | False | XLOC_033491 |
| TCONS_00068784 | lncRNA | downstream | 888790 | 11689677 ~ 11819578 (+) | False | XLOC_033491 |
| TCONS_00068785 | lncRNA | downstream | 888798 | 11689685 ~ 11734096 (+) | False | XLOC_033491 |
| TCONS_00065524 | mRNA | upstream | 69357 | 10610791 ~ 10632375 (+) | True | XLOC_033480 |
| TCONS_00065523 | mRNA | upstream | 69364 | 10592152 ~ 10632368 (+) | False | XLOC_033480 |
| TCONS_00065519 | mRNA | upstream | 118581 | 10562118 ~ 10583151 (+) | False | XLOC_033479 |
| TCONS_00065531 | mRNA | downstream | 110509 | 10911396 ~ 10966477 (+) | False | XLOC_033484 |
| TCONS_00065532 | mRNA | downstream | 110530 | 10911417 ~ 11005919 (+) | False | XLOC_033484 |
| TCONS_00065533 | mRNA | downstream | 110540 | 10911427 ~ 11004145 (+) | True | XLOC_033484 |
| TCONS_00065534 | mRNA | downstream | 396135 | 11197022 ~ 11339752 (+) | False | XLOC_033486 |
| TCONS_00065535 | mRNA | downstream | 397053 | 11197940 ~ 11342611 (+) | True | XLOC_033486 |
| TCONS_00065525 | other | upstream | 18125 | 10683487 ~ 10683607 (+) | True | XLOC_033482 |
| TCONS_00065522 | other | upstream | 119107 | 10578349 ~ 10582625 (+) | True | XLOC_033479 |
| TCONS_00065516 | other | upstream | 453545 | 10248072 ~ 10248187 (+) | True | XLOC_033477 |
| TCONS_00065503 | other | upstream | 1396151 | 9290965 ~ 9305581 (+) | False | XLOC_033469 |
| TCONS_00065500 | other | upstream | 1655430 | 9041175 ~ 9046302 (+) | True | XLOC_033466 |
| TCONS_00065536 | other | downstream | 412521 | 11213408 ~ 11213524 (+) | True | XLOC_033487 |
| TCONS_00065544 | other | downstream | 1371242 | 12172129 ~ 12172246 (+) | True | XLOC_033493 |
| TCONS_00065547 | other | downstream | 2052216 | 12853103 ~ 12853217 (+) | True | XLOC_033496 |
| TCONS_00065558 | other | downstream | 2539256 | 13340143 ~ 13340268 (+) | True | XLOC_033501 |
| TCONS_00065588 | other | downstream | 3416083 | 14216970 ~ 14266258 (+) | False | XLOC_033514 |
