RNA id: TCONS_00065514


Basic Information

Item Value
RNA id TCONS_00065514
length 3150
RNA type mRNA
GC content 0.55
exon number 23
gene id XLOC_033475
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 9981757 ~ 10257193 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGCCAAAAAATGGACCAACCCACCAGGAATactcccggtcctcctgattagccaatccaggcctACAGATGTGGTCGTGCCACAGGAGCTGCAGCCGGGTGAGATGCACCTGCTTTCGGGAGGTAACAGGTGGAGCAGAGGCCGCAAACGCCGCTCGGACCCTCAGCAGGAGGACCATCTGTTTCTGCGCCTTCCGGCTTTTGGTAAGGAGCTGTACTTGGAGCTCCAGAGAGATGCCTCTTTCCTCACTGAGGGGTTTGTGACAGAGGAGAGGAGGGAGGAGGGCAGTGTCCGCCGGTGTTTCTATACTGGAGCCATTCTTAATCACACGGACTCCTTCGTCTCGCTGGACACGTGTGGAGGACTGACTGGCTTGGTTCAGACTGCAGAGGAAAGACTGTTCATCGAGCCAGTGGGCCAGGCCGCAGATTCCTTCTCTGGCTGGGAGCACAGAGTGATCCGGGAAAAGCATTCTTCACCAGACGGACCTGCTCCCGCTGCAGACGGCAGAGAACAATTCTGCCAAAGCATCCACGGTGAGACGATCACTTTAATCTGTCTTCTCTTTCTCTGTCTACAGGTGTATAACATGTTTCAGCACCAGAGTTTGGGTTTGAGGCTAAACATCCGAGTCACCAAGCTGGTACTCCTGCACAACCGTCCAGAAAAGCTGAAGGTGGGTCATCATGGAGAAAAAGCCCTGGAGAGCTTCTGTCACTGGCAGCACGAGGAATATGGCGCCCGATATCTAGGAAACAATCACGTTCCCGGCAGCAGAGATGACCCTCCTCCTGTGGACGCGGCTGTGCTGGTCACCAGAACAGACTTCTGCGTCCACAAAGATGAGCCTTGTGACACAGTTGGAATCGCGTATCTGGGCGGCACCTGTAGCTCCAAGAGGAAGTGTGTGCTGGCGGAGGACAACGGACTCAACCTGGCCTTCACCATCGCTCATGAGCTCGGACACAACATGGGCATGAGCCATGATGATGATCATGCCAGCTGCACTGGCCACTCTCACATCATGTCTGGCGAATGGGTGAAAGGGCGTAACCCCAGCGACCTCTCCTGGTCCACCTGCAGTCGGGATGACCTGGAGAAGTTCCTCAGGTCTAAAGCCAGTGGTTGTTTGCTGCACACTGATCCCCGTAACCGATATCTCGTCCGTCTGCCAGCCAAACTGCCCGGGATGCACTACAGCGCTGATGAGCAGTGCCAGATCCTGTTCGGCACCAACGCCACTTTCTGCACTGatatggagCACCTGATGTGCGCTGGTCTCTGGTGTTTAGTGGAAGGAGACACGTCATGCAAGACCAAACTAGATCCTCCGCTGGACGGCACAGAATGCGGAGCTGATAAGtgGTGCCGGGCCGGTGAGTGTGTCAGTAAGACGCCAATCCCGCAGCATGTGGATGGAGACTGGAGTCCCTGGAGCACGTGGAGCATGTGCAGCCGGACGTGTGGCACAGGAGCACGCTTTCGACAGAGGAAATGCGACAACCCGCCGCCCGGTCCAGGAGGAAAATACTGTCAGAAGGCCAGTGTTGAGCATAAAGTGTGTGAGGGTCCGCCGTGTACAAAGGGTCTGCCTACATTTAGAGACCAGCAGTGTCAATCTCATGAGCGACAAGCCAGTAAGAAGAGCCAGATGTGGACAGCGGTCATCGATGATGAAAAGCCGTGTGCTTTGTATTGCACACCCGTCGGCAGTGATTCCCCAGTGTTAGTGGCAGAACGGGTGCTGGACGGGACGCCATGTGGACCTTATGAGAGCGACCTGTGTGTGAACGGAAAATGCCAGAAAATCGGCTGTGACGGCATCATCGGATCATCTGCGAAAGAAGACAGATGCGGCGTCTGCAACGGTGACGGCAAATCCTGCAGGATCGTCAAAGGAGACTTCAACCACTCCAAAGGAATGGGCTACATCGAGGCGGCTGTGATTCCAGTGGGAGCTCGGAGAATCAAAGTGGTGGAGGACAAACCGTCACACAGTTTTCTGGCTCTGAAGGACTCCAGCAAGAGATCCATAAACAACGACTGGAAGATTGAGCTGCCCGGGGAGTTTGAGCTCGCTGGCACCACGGTGCGCTACGTGAGGAGAGGATTGTGGGAAAAGATGTCCGCCAAGGGACCCACTAAAACTCCACTCCATCTCATGGTTCTGCTGTTCCATGATCAGACGTATGGGATCCACTATGAGTATACAGTGGCTCTGAACCACTCTCAGGAGAACAGCAGTGATCTGGTGAAGGAGCCCGAGCACATGTACCTGTGGACCCACAGCAGCTGGGAGGACTGCAGCGTGCACTGCGGAGGAGGAGAGAGACGGACTGTGGTGTCTTGCATGAGAATCATCAATAAGACCATGACTCCAGTAAACGACAGCTCCTGTCAGGTGGAGAACAAACCCTCGCCTCAGATCCGCCAGTGTAACATCCACCCCTGCCAATACAGGTGGGTGACTGGTGATTGGACGCAGTGTTCGTTAACCTGTGGTAAAGGCTTGCAGCAGAGGGAAGTCGGCTGCATTTACCAACTGCAAAATGGCACATATATTCCCACCAGAGACCTGTACTGTCTGAGCTCCAAACCGGCCAGCGTTCAGCACTGCGAGGGACGTCACTGCCTCACCGTGTGGGAGGCATCCGAATGGTCGCAGTGTTCCTCTGAATGTGGACACGGCAGCAGGAGGCGGACGGTGACCTGCACTAATCCTCATGGTCTCTGTGACCCTGTGTCCCGTCCCGCTGAGGTGGAGGCCTGCGAGGACCACTCCAAATGTTACGAGTGGAAGACCGGCGAATGGTCCAAGTGCTCGTCATCATGTGGGCGGGGCTTGCAGTCCAGAGTGGTCCAATGCATGCACAGAGTGAGTGGTCGCCACGGCAGCGACTGTCCAGCAGTGCTGAAGCCGGCGACGTACAGACAGTGTCATCAGAGCACCTGTAACGCCAGAGGGAACATCAACACAATCACCTCTCCAAGACTGGCTGCATTGACGTATAAGTGCGTGGGCGATCAGTGGGCGGTTTACTGCAAGGTGATCCGGGAGAAGAACCTGTGCCAGGACATGCGCTGGTACCAACGCTGCTGCCAGACCTGCAGAGACTTTTACACCAACAAAATGCCCCCCAAGAGTTAA

Function

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0006508 proteolysis biological_process
GO:0031012 extracellular matrix cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-121030-7 Predicted to enable metalloendopeptidase activity. Predicted to be involved in extracellular matrix organization. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in several structures, including digestive system; eye; heart; pleuroperitoneal region; and thymus. Human ortholog(s) of this gene implicated in Weill-Marchesani syndrome. Orthologous to human ADAMTS17 (ADAM metallopeptidase with thrombospondin type 1 motif 17).

Ensembl:

ensembl_id ENSDART00000113429

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068553 lncRNA upstream 425112 9556044 ~ 9556645 (+) True XLOC_033472
TCONS_00065504 lncRNA upstream 676176 9299640 ~ 9305581 (+) False XLOC_033469
TCONS_00065505 lncRNA upstream 676176 9302610 ~ 9305581 (+) True XLOC_033469
TCONS_00068552 lncRNA upstream 918376 9061425 ~ 9063381 (+) True XLOC_033467
TCONS_00068779 lncRNA upstream 1141142 8835334 ~ 8840615 (+) True XLOC_033465
TCONS_00068554 lncRNA downstream 304925 10562118 ~ 10583144 (+) False XLOC_033479
TCONS_00068555 lncRNA downstream 410278 10667471 ~ 10681656 (+) True XLOC_033481
TCONS_00065526 lncRNA downstream 444539 10701732 ~ 10800887 (+) False XLOC_033483
TCONS_00065529 lncRNA downstream 475218 10732411 ~ 10800886 (+) False XLOC_033483
TCONS_00068781 lncRNA downstream 509272 10766465 ~ 10800876 (+) False XLOC_033483
TCONS_00065511 mRNA upstream 20030 9904627 ~ 9961727 (+) False XLOC_033474
TCONS_00065513 mRNA upstream 34501 9922607 ~ 9947256 (+) True XLOC_033474
TCONS_00065512 mRNA upstream 36676 9922607 ~ 9945081 (+) False XLOC_033474
TCONS_00065508 mRNA upstream 85852 9873750 ~ 9895905 (+) False XLOC_033473
TCONS_00065510 mRNA upstream 85953 9880811 ~ 9895804 (+) True XLOC_033473
TCONS_00065517 mRNA downstream 93845 10351038 ~ 10372503 (+) True XLOC_033478
TCONS_00065518 mRNA downstream 304925 10562118 ~ 10583143 (+) False XLOC_033479
TCONS_00065519 mRNA downstream 304925 10562118 ~ 10583151 (+) False XLOC_033479
TCONS_00065520 mRNA downstream 305824 10563017 ~ 10583143 (+) False XLOC_033479
TCONS_00065521 mRNA downstream 305837 10563030 ~ 10582582 (+) False XLOC_033479
TCONS_00065503 other upstream 676176 9290965 ~ 9305581 (+) False XLOC_033469
TCONS_00065500 other upstream 935455 9041175 ~ 9046302 (+) True XLOC_033466
TCONS_00065497 other upstream 1300576 8670465 ~ 8681181 (+) True XLOC_033464
TCONS_00065492 other upstream 1551838 8428954 ~ 8429919 (+) True XLOC_033460
TCONS_00065484 other upstream 2202581 7778963 ~ 7779176 (+) True XLOC_033454
TCONS_00065522 other downstream 321156 10578349 ~ 10582625 (+) True XLOC_033479
TCONS_00065525 other downstream 426294 10683487 ~ 10683607 (+) True XLOC_033482
TCONS_00065536 other downstream 956215 11213408 ~ 11213524 (+) True XLOC_033487
TCONS_00065544 other downstream 1914936 12172129 ~ 12172246 (+) True XLOC_033493
TCONS_00065547 other downstream 2595910 12853103 ~ 12853217 (+) True XLOC_033496

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000343_01753365_01818467.mRNA True 2763 mRNA 0.52 21 CI01000343 1753365 ~ 1818529 (+)