RNA id: TCONS_00065517


Basic Information

Item Value
RNA id TCONS_00065517
length 2608
RNA type mRNA
GC content 0.49
exon number 2
gene id XLOC_033478
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 10351038 ~ 10372503 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTAATCATTCATCTGTCCCCTGCAGGCTGTCCTTTCTTCCCAAAATCAACAATCAAAACAACAATGGATGCCATGCCAGAGTATTCCCTCTTCCTTGTGAGGATTTTGGAGGAATTGGATACTAAGTACAGTACTGTTTCCTACCAGGACCTTTGTAAATCCCTCTGTGCCAGGTTTGACTTGGTCCATTTGGCTAAGCTGAGGAGTCTGCTATTCTACACAGCATGTTTAGATCCAGCTTTCCCCGCAACCTTATTCAAGGACAAGATGAGGTGCTCGGTGGAAGACCAACAATCCAAGAAGCTCATGGTGGCGGCTGATATCGTTACCATGTTTAATCTCATCCAGATGAATGGAGGTATGGCCAAAGACAAGCTGCCAATGGGTCCAAGACCCAAGTTTCACAAGAACCAGTCATTTGAGTCCTGTCGATCTGACACGGATGTGTATAAATACAATGACAATGACAGGGCGTACAAACTTTTGGACACCAGGGGTCATCACGTATCTCGAAATTCACCCAAATCTGACTGCAACAGCTGCCAGCAGTTTATACCAACCTCAGACCCCAACTTCCTCCTGGGAGTCACCAAGGATCTGAAATGTAGGGCAGCCTCGCTGGATAAACTACAGCATCTGCCACAGTATGCCAGTGTCAGTCCTCCTCCGTGCGAGATGCAGAGCACTTACTTCCCCATGGACATCGACAGCGAGTCTACCACAGACCAGGAATCTCTCCACGCCAACCCAGGGATCAAGGATGTTTACGTGTCCAGCGGAGAGCCTTTTACCGTGCACTCCTGTGTGCAAAAGCGGAATATCTTCAAAGAGGATTTCCACAACCTTGTTGCCTTTTCGCCCCATGTGATCACCACGGAGTGCAGAGCGAATCCCAAATCTGGTGGCAATTACCACCACAGGAGGGAGCTGAGCAAGCCTCCCACGTTCTTCAATCATAGTTTTGAGCTGCCATACAGCAACCCTTACTTTGAACCCGTCAACTCACCCCTCCAGAACAAAGGGCGGGTCAAGCACGAGAGCCTGGATGACTTGCAAGCGTCCACTTACTTTGGACCCACAACAGTTTCTGAGTGTGTGAGCAACAGGAGGACTTCTAGTAAGCATGGCAGACAACCAGCCTGGCCTGTCAAGAGCTTGAGTTTGAATACCGAAGAAGGTCCTGATTTTGAGAGGTCCTTTTTGAACGGCAAAGTGCCAAAGGACAATCACCGTCACAACATTGGCACCATGGAGAATGACCAACACTTTCAGTGTGCAAAGGACAAGCCCACTGCCTCTCCCTCAGGTTTCTCCAAGAAGTCCAATGGAAGCAAAACTAAAGACATGTCTTCTGTTGCTTGCGGACCTGGTATTGAGAAAAGAGAGGTTGGGAGAAGATACAAGGACAAGAGTATCAACTGTCCATCTTTTCAGTCAAGTAATGTGGACAACGGCATGAGTGTCGGGACTCAGACGGAACAACATGAGTCCAGGAAGGTGAAAGATTATCCCAGTCAAAACAAATTTAAAGAGAGGCCACCCTTCAAACACTCAGAGGAAGACTCTGAGATCGTCAGCGACAATATTAGTGACATCTTTCGCTTTCTGGATGATATGAGCGTGTGCGAATCTCTTGGAGTTGTGCAGCCATCATGCTATAACAGCAACGGCTCACTGTCTCAGGTGACTAAATCAGATGGGGACAGCTCGCCTGAACGAAACACTATTAAGATTGGCAAAACTGGGATCAAACTCGACCGACTTTTCCAGTCACTGGAGAACTCTGATGATGAACTCAAAGAGAGTGTTTGCAAACTGGTACTCAGGATTGGTGAGATTGAGAAGAAGCTCGAGTCCCTTTCTGGGGTGCGAGGGGAGATCTCTCAGGTGCTCTCAAAGCTTACTAGGCTGGATGAAAAGATTCAAGAGCCAGAGGTGAATGGGAAATCGAGTGATGGTGGTCTGGTGGAACAGATAAAGACTGATGCCAACCTCTCGCCTCATGTTTTTCAATGTCACACCACTGGGCACAACATGAAGGTGGAAAAAAGTCCAGAGTGGTGTTGCTCGGAAGCTGATGGGAGTGAAAGCCTGAGGGTAAAAGCTTTAAAGAAAAGCGTTTTCACTCGCAGGTCATCCAGGTCACTTAATGAGGAGAACAGCGCCACTGAGTCCAAAGTGGCCAGCATCACCAATTCACCTCGAGACTGGAGAACAGTTTCTTATTCCAGTCACAACGGGGAGGAAGGCAAAGAAAGAGATCGACATAGTGAAGGCAAAGAACGGCATAGGAAATCCCGAGAGGCGGAGCGTCAGTATGAAGCTCATCAGGGCCACCGCTCCTCAAAGCCGCCCAAGGACTCCTACCTAGTGGAGCAGGTGTTCAGTCCACACCACTTCCCTCCCACTGTCAAGACTCACGTTAAGGGCAGTCCTCTTTACACGGACCTGCGTCTGACGGGCCACGCGGACGGGAAACGCTCACAGCCCTCCTGGACCATCGAAGAGTACAAACGCAACTCAGGAGATAAGAACAAGCTCAGCGCATTGGACCTGCAGGTGAGCCTGAACTCGCTCTATTTATAATACATGATCACCTGGCCAGATT

Function

GO:

id name namespace
GO:0010977 negative regulation of neuron projection development biological_process
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0031397 negative regulation of protein ubiquitination biological_process
GO:0030308 negative regulation of cell growth biological_process
GO:0032007 negative regulation of TOR signaling biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-160114-82 Predicted to be involved in several processes, including negative regulation of TOR signaling; negative regulation of neuron projection development; and negative regulation of protein ubiquitination. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in habenula. Orthologous to human MINAR1 (membrane integral NOTCH2 associated receptor 1).

Ensembl:

ensembl_id ENSDART00000173256

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068780 lncRNA upstream 296833 10053343 ~ 10054205 (+) True XLOC_033476
TCONS_00068553 lncRNA upstream 794393 9556044 ~ 9556645 (+) True XLOC_033472
TCONS_00065504 lncRNA upstream 1045457 9299640 ~ 9305581 (+) False XLOC_033469
TCONS_00065505 lncRNA upstream 1045457 9302610 ~ 9305581 (+) True XLOC_033469
TCONS_00068552 lncRNA upstream 1287657 9061425 ~ 9063381 (+) True XLOC_033467
TCONS_00068554 lncRNA downstream 189615 10562118 ~ 10583144 (+) False XLOC_033479
TCONS_00068555 lncRNA downstream 294968 10667471 ~ 10681656 (+) True XLOC_033481
TCONS_00065526 lncRNA downstream 329229 10701732 ~ 10800887 (+) False XLOC_033483
TCONS_00065529 lncRNA downstream 359908 10732411 ~ 10800886 (+) False XLOC_033483
TCONS_00068781 lncRNA downstream 393962 10766465 ~ 10800876 (+) False XLOC_033483
TCONS_00065515 mRNA upstream 93845 9981757 ~ 10257193 (+) False XLOC_033475
TCONS_00065514 mRNA upstream 93845 9981757 ~ 10257193 (+) True XLOC_033475
TCONS_00065511 mRNA upstream 389311 9904627 ~ 9961727 (+) False XLOC_033474
TCONS_00065513 mRNA upstream 403782 9922607 ~ 9947256 (+) True XLOC_033474
TCONS_00065512 mRNA upstream 405957 9922607 ~ 9945081 (+) False XLOC_033474
TCONS_00065518 mRNA downstream 189615 10562118 ~ 10583143 (+) False XLOC_033479
TCONS_00065519 mRNA downstream 189615 10562118 ~ 10583151 (+) False XLOC_033479
TCONS_00065520 mRNA downstream 190514 10563017 ~ 10583143 (+) False XLOC_033479
TCONS_00065521 mRNA downstream 190527 10563030 ~ 10582582 (+) False XLOC_033479
TCONS_00065523 mRNA downstream 219649 10592152 ~ 10632368 (+) False XLOC_033480
TCONS_00065516 other upstream 102851 10248072 ~ 10248187 (+) True XLOC_033477
TCONS_00065503 other upstream 1045457 9290965 ~ 9305581 (+) False XLOC_033469
TCONS_00065500 other upstream 1304736 9041175 ~ 9046302 (+) True XLOC_033466
TCONS_00065497 other upstream 1669857 8670465 ~ 8681181 (+) True XLOC_033464
TCONS_00065492 other upstream 1921119 8428954 ~ 8429919 (+) True XLOC_033460
TCONS_00065522 other downstream 205846 10578349 ~ 10582625 (+) True XLOC_033479
TCONS_00065525 other downstream 310984 10683487 ~ 10683607 (+) True XLOC_033482
TCONS_00065536 other downstream 840905 11213408 ~ 11213524 (+) True XLOC_033487
TCONS_00065544 other downstream 1799626 12172129 ~ 12172246 (+) True XLOC_033493
TCONS_00065547 other downstream 2480600 12853103 ~ 12853217 (+) True XLOC_033496

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000343_01855540_01884316.mRNA True 2998 mRNA 0.50 4 CI01000343 1855540 ~ 1884477 (+)