RNA id: TCONS_00065750


Basic Information

Item Value
RNA id TCONS_00065750
length 491
RNA type mRNA
GC content 0.54
exon number 2
gene id XLOC_033604
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 19850889 ~ 19907964 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGGATTTAACGGACACTGTGGCTGGAAAGAGTCAGAGGAACGGCGAGCTGGGAAACCTGTATGATCAGGACTGAAGGAAAACTGTTATTCtCCTCTCCTTTTCTCTCTGCCAGATGATGACTGAGGTTGCGAAGGCACAGACAGACTCGGTGGTGTCCAGTGTGGAGTCCATGCTGGCGGACGCGGCCCGACTGCAGACGCAGTGCCGGGAGCGGAGCGGTGAGCTGGCAGTGGCTGCtgtggagctgcaccaggagacccAGAGCCTACGGGACCAGTGCGAGGCCACACAGCTGGACATGGCCCGCCTCCGACGGACGCTGGACGACCTGCTGGACACAAAACACGCCTACGAGGCCCGAGAGAGACAGACCAGAAAACTCAGCAAGCAGCTGTAGAGAGAGCAGAGTAACTGAACAGGAGTCTAAAAGCTCATTCGAAGTTGTTGATCTCAttttcatgaaaataaataaaagtgtgttaAGAATAA

Function

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0031573 intra-S DNA damage checkpoint biological_process
GO:0000712 resolution of meiotic recombination intermediates biological_process
GO:0000727 double-strand break repair via break-induced replication biological_process
GO:0006281 DNA repair biological_process
GO:0048476 Holliday junction resolvase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0004518 nuclease activity molecular_function
GO:0004519 endonuclease activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0048257 3'-flap endonuclease activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-141216-187 No description available

Ensembl:

ensembl_id ENSDART00000173452

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065746 lncRNA upstream 39757 19861897 ~ 19864379 (+) False XLOC_033604
TCONS_00065744 lncRNA upstream 51537 19851464 ~ 19852599 (+) False XLOC_033604
TCONS_00065739 lncRNA upstream 132317 19762596 ~ 19771819 (+) True XLOC_033601
TCONS_00065737 lncRNA upstream 157611 19738715 ~ 19746525 (+) True XLOC_033600
TCONS_00068806 lncRNA upstream 239475 19664036 ~ 19664661 (+) True XLOC_033599
TCONS_00065757 lncRNA downstream 224396 20132360 ~ 20137469 (+) True XLOC_033607
TCONS_00068807 lncRNA downstream 474101 20382065 ~ 20642913 (+) True XLOC_033613
TCONS_00068808 lncRNA downstream 545162 20453126 ~ 20464807 (+) False XLOC_033615
TCONS_00068809 lncRNA downstream 545877 20453841 ~ 20464807 (+) True XLOC_033615
TCONS_00065777 lncRNA downstream 568324 20476288 ~ 20477121 (+) True XLOC_033616
TCONS_00065747 mRNA upstream 4134 19882066 ~ 19900002 (+) False XLOC_033604
TCONS_00065745 mRNA upstream 21037 19851464 ~ 19883099 (+) False XLOC_033604
TCONS_00065742 mRNA upstream 23870 19850889 ~ 19880266 (+) False XLOC_033604
TCONS_00065743 mRNA upstream 49096 19851422 ~ 19855040 (+) False XLOC_033604
TCONS_00065741 mRNA upstream 56099 19835569 ~ 19848037 (+) True XLOC_033603
TCONS_00065751 mRNA downstream 109247 20017211 ~ 20028167 (+) False XLOC_033605
TCONS_00065752 mRNA downstream 111161 20019125 ~ 20026538 (+) True XLOC_033605
TCONS_00065753 mRNA downstream 122924 20030888 ~ 20052257 (+) False XLOC_033606
TCONS_00065754 mRNA downstream 123238 20031202 ~ 20055983 (+) True XLOC_033606
TCONS_00065755 mRNA downstream 202004 20109968 ~ 20142734 (+) False XLOC_033607
TCONS_00065712 other upstream 877066 19026314 ~ 19027070 (+) True XLOC_033584
TCONS_00065710 other upstream 888625 19014767 ~ 19015511 (+) True XLOC_033581
TCONS_00065709 other upstream 895557 19007840 ~ 19008579 (+) True XLOC_033580
TCONS_00065656 other upstream 2556997 17346399 ~ 17347139 (+) True XLOC_033546
TCONS_00065651 other upstream 2643368 17255795 ~ 17260768 (+) False XLOC_033545
TCONS_00065774 other downstream 559585 20467549 ~ 20471363 (+) False XLOC_033616
TCONS_00065791 other downstream 737217 20645181 ~ 20651731 (+) False XLOC_033625
TCONS_00065803 other downstream 1724136 21632100 ~ 21752761 (+) False XLOC_033634
TCONS_00065804 other downstream 1813164 21721128 ~ 21752761 (+) False XLOC_033634
TCONS_00065845 other downstream 2888119 22796083 ~ 22800865 (+) False XLOC_033659

Expression Profile

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