RNA id: TCONS_00065744


Basic Information

Item Value
RNA id TCONS_00065744
length 1040
lncRNA type retained_intron
GC content 0.45
exon number 2
gene id XLOC_033604
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 19850889 ~ 19907964 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATGTGAATTAGATGTCGGACTGAAATATGCCGacggatcaggtgtgtttgggaCGGAAGCGCCCTCTGCCATCGTGCCCCAATCCTCTGTTTCTGCAGTGGTTGACGGAATTACGGGACAGCGCCAAGGAGAAGGGCTTGAAGACTCAGTTCGTCTACCAGAAGGCCATAAACTCTTTGAAAAAATATCCTCTTCCTCTGAAAAACGGGAAGGAGGCGAAGATCCTGCAGAACTTCGGCGACGGGATCTGCAAGATTTTGGACGAGCGCCTGCAGAAACACTACCGGGAAAACGGTGTGGAGCTTCAGTGTGTAACTGAGGGGTTCATTCTTGTTGAtctacccaggtagcaaagacttctggcccagatttggcatacaTCTGGCACAGCAGGCGCTCATCCGGCAGTGGCATtaagcatgtgggccaaacatggctctggtttggcagaggtggcactgtcTTTAGGGTGCCACAGAATACTTGGGCCAGaagtaaaatgtagtatttggcccaaatgttaataattgatatgtagGCCGTGTAAGTTtagcctatcttgacccacatttaaaatgcatgtttattattttcaaataaataaaaaaaagtctaccAATCAGGTTGCTTTGAGAAAAAAACATGCCCATAGCATGCCTAAAGCGCAATGATTCATGaatttatcaatttcattgcagttctgacacaccaacatatcaggcccagttcaggctcagttatgggttattaacttggctgagacttggcccagatatggtccatgtttggtccttgtctggaagccagactggGTCCACttatgtactgtaattcactgcaTTATGTGGGCCAAGCACAAGCTGATCTTATGGgacagagctgggccagagatattttgctatgtgggtactCTGGGCCCCTTCACTAAAAGCCCATCCTAAAATGTGATCCTGCAGCACGAAACCAGTCATAATTGTCAGTTTTTTAATTGCTCCATATACATTATCTGTTTGCAGAATAAATAAGGCTTTCTTTGTGC

Function

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0031573 intra-S DNA damage checkpoint biological_process
GO:0000712 resolution of meiotic recombination intermediates biological_process
GO:0000727 double-strand break repair via break-induced replication biological_process
GO:0006281 DNA repair biological_process
GO:0048476 Holliday junction resolvase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0004518 nuclease activity molecular_function
GO:0004519 endonuclease activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0048257 3'-flap endonuclease activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-040426-2923 Predicted to enable 3'-flap endonuclease activity. Predicted to be involved in double-strand break repair via break-induced replication; mitotic intra-S DNA damage checkpoint signaling; and resolution of meiotic recombination intermediates. Predicted to act upstream of or within DNA recombination and DNA repair. Predicted to be part of Holliday junction resolvase complex. Predicted to be active in nucleus. Orthologous to human MUS81 (MUS81 structure-specific endonuclease subunit).

Ensembl:

ensembl_id ENSDART00000133028

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065739 lncRNA upstream 79645 19762596 ~ 19771819 (+) True XLOC_033601
TCONS_00065737 lncRNA upstream 104939 19738715 ~ 19746525 (+) True XLOC_033600
TCONS_00068806 lncRNA upstream 186803 19664036 ~ 19664661 (+) True XLOC_033599
TCONS_00068805 lncRNA upstream 213075 19636729 ~ 19638389 (+) True XLOC_033598
TCONS_00068804 lncRNA upstream 336561 19512765 ~ 19514903 (+) True XLOC_033592
TCONS_00065746 lncRNA downstream 9298 19861897 ~ 19864379 (+) False XLOC_033604
TCONS_00065757 lncRNA downstream 279761 20132360 ~ 20137469 (+) True XLOC_033607
TCONS_00068807 lncRNA downstream 529466 20382065 ~ 20642913 (+) True XLOC_033613
TCONS_00068808 lncRNA downstream 600527 20453126 ~ 20464807 (+) False XLOC_033615
TCONS_00068809 lncRNA downstream 601242 20453841 ~ 20464807 (+) True XLOC_033615
TCONS_00065741 mRNA upstream 3427 19835569 ~ 19848037 (+) True XLOC_033603
TCONS_00065740 mRNA upstream 25718 19817306 ~ 19825746 (+) True XLOC_033602
TCONS_00065738 mRNA upstream 44206 19762595 ~ 19807258 (+) False XLOC_033601
TCONS_00065736 mRNA upstream 91241 19738665 ~ 19760223 (+) False XLOC_033600
TCONS_00065734 mRNA upstream 229835 19615056 ~ 19621629 (+) False XLOC_033597
TCONS_00065747 mRNA downstream 29467 19882066 ~ 19900002 (+) False XLOC_033604
TCONS_00065748 mRNA downstream 29626 19882225 ~ 19907758 (+) False XLOC_033604
TCONS_00065749 mRNA downstream 51325 19903924 ~ 19907964 (+) False XLOC_033604
TCONS_00065750 mRNA downstream 51537 19904136 ~ 19907964 (+) True XLOC_033604
TCONS_00065751 mRNA downstream 164612 20017211 ~ 20028167 (+) False XLOC_033605
TCONS_00065712 other upstream 824394 19026314 ~ 19027070 (+) True XLOC_033584
TCONS_00065710 other upstream 835953 19014767 ~ 19015511 (+) True XLOC_033581
TCONS_00065709 other upstream 842885 19007840 ~ 19008579 (+) True XLOC_033580
TCONS_00065656 other upstream 2504325 17346399 ~ 17347139 (+) True XLOC_033546
TCONS_00065651 other upstream 2590696 17255795 ~ 17260768 (+) False XLOC_033545
TCONS_00065774 other downstream 614950 20467549 ~ 20471363 (+) False XLOC_033616
TCONS_00065791 other downstream 792582 20645181 ~ 20651731 (+) False XLOC_033625
TCONS_00065803 other downstream 1779501 21632100 ~ 21752761 (+) False XLOC_033634
TCONS_00065804 other downstream 1868529 21721128 ~ 21752761 (+) False XLOC_033634
TCONS_00065845 other downstream 2943484 22796083 ~ 22800865 (+) False XLOC_033659

Expression Profile

//