RNA id: TCONS_00068805



Basic Information


Item Value
RNA id TCONS_00068805
length 1108
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id XLOC_033598
representative True

Chromosome Information


Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 19636729 ~ 19638389 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CAAACATGTCGGACATTTTATTTCATAGTTAAATTTAATACAGTATTAGCTTGAAGTTTtcagcaaaataaaaattaaacagagTCTGTCCCTTTACATACAAAAAAATTGCAAACATCTTTCAAATGAGGCTCTACTGGTTAAGAAGATACTCACCTTAATCTGGACACATTCAATGTTACATAGAGAGCATGAGTCAGCTGATCATCTGGGTAGTGGCTTAGAAGTTCTAGGTCTTCATTAGAAAGTCCAAAGCTTGCTAGGATGCTGGTGGCACTTTCCGAAGTGTAGCGATTTGGTCGCTGTTCCGGCGGACGTTGGCTGCTCAAACCACTTGGTCCTCCACCAAAACCTGCAGACTTGAACACCGGTGAGGAACTGGAAGGGCGCTCCATGCTTGATGAAAAGAGCTTGCTTGGGGCTTGGTACATGGACCAGTCCACCTCATCTGATCTCGAAGACCCTGAAAACCCGCTGCCCCTGGAGGAAAGCACTTCATCCATGGAATCGTTTCTCAGACGAGGATCTGCTTTTTTGGGTTGCTGGAGCATTTGCGAAATAATGCGCACTTCCTCACGGGCTCCCCGAAGGTTACGGTCAATGGCAGCTTCGATTTCTGTTGAAATCTGCGACTGACCTTGTCCCATTGAGAAGGGCGAGCTGCCCAACAATCCTGCACGAGAACCAGACATGGTACCTGGGCCAAGACGGGCTGCACCCATCTCCATTCGAGGCTGTGACACAAGACCATATTGGCTGGGCACGATGGGTCTTTGACCGCTGGGGAAAGGTCCTCCACGAGGATTGTATAATGGATGCGACATAGTGACCTTAAGCAAGTTGAGCAAGGTCAAAGCAGCTGTAGGAACTGCAGCCGGAGTGACACTTGTGCCAACAATTGCATTCAGCTGGTGCAGTGCCAACTGAGTCTTTATCTGTGCCAACTGCAGGGAGACAGGGCTTAAGATGGGCAGATTCCCAAAATGTCTCACGGAATTTGGAACAGGGTGCACGCAACTTTCCAAGAACAACGAAAAGCTGGAAAAATTAGggggaaaaacacacaaaatggatTACTGGCTTGCCGTCGTCAGGTCCTCATACAAAA

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00068804 lncRNA upstream 121826 19512765 ~ 19514903 (+) True XLOC_033592
TCONS_00065727 lncRNA upstream 137276 19498511 ~ 19499453 (+) True XLOC_033590
TCONS_00065726 lncRNA upstream 137334 19495958 ~ 19499395 (+) False XLOC_033590
TCONS_00065722 lncRNA upstream 151879 19484269 ~ 19484850 (+) True XLOC_033589
TCONS_00065718 lncRNA upstream 160416 19474190 ~ 19476313 (+) True XLOC_033588
TCONS_00068806 lncRNA downstream 25647 19664036 ~ 19664661 (+) True XLOC_033599
TCONS_00065737 lncRNA downstream 100326 19738715 ~ 19746525 (+) True XLOC_033600
TCONS_00065739 lncRNA downstream 124207 19762596 ~ 19771819 (+) True XLOC_033601
TCONS_00065744 lncRNA downstream 213075 19851464 ~ 19852599 (+) False XLOC_033604
TCONS_00065746 lncRNA downstream 223508 19861897 ~ 19864379 (+) False XLOC_033604
TCONS_00065734 mRNA upstream 15100 19615056 ~ 19621629 (+) False XLOC_033597
TCONS_00065735 mRNA upstream 15588 19615068 ~ 19621141 (+) True XLOC_033597
TCONS_00065733 mRNA upstream 31829 19600262 ~ 19604900 (+) True XLOC_033596
TCONS_00065732 mRNA upstream 49187 19562045 ~ 19587542 (+) True XLOC_033595
TCONS_00065731 mRNA upstream 77887 19552381 ~ 19558842 (+) True XLOC_033594
TCONS_00065736 mRNA downstream 100276 19738665 ~ 19760223 (+) False XLOC_033600
TCONS_00065738 mRNA downstream 124206 19762595 ~ 19807258 (+) False XLOC_033601
TCONS_00065740 mRNA downstream 178917 19817306 ~ 19825746 (+) True XLOC_033602
TCONS_00065741 mRNA downstream 197180 19835569 ~ 19848037 (+) True XLOC_033603
TCONS_00065742 mRNA downstream 212500 19850889 ~ 19880266 (+) False XLOC_033604
TCONS_00065712 other upstream 609659 19026314 ~ 19027070 (+) True XLOC_033584
TCONS_00065710 other upstream 621218 19014767 ~ 19015511 (+) True XLOC_033581
TCONS_00065709 other upstream 628150 19007840 ~ 19008579 (+) True XLOC_033580
TCONS_00065656 other upstream 2289590 17346399 ~ 17347139 (+) True XLOC_033546
TCONS_00065651 other upstream 2375961 17255795 ~ 17260768 (+) False XLOC_033545
TCONS_00065774 other downstream 829160 20467549 ~ 20471363 (+) False XLOC_033616
TCONS_00065791 other downstream 1006792 20645181 ~ 20651731 (+) False XLOC_033625
TCONS_00065803 other downstream 1993711 21632100 ~ 21752761 (+) False XLOC_033634
TCONS_00065804 other downstream 2082739 21721128 ~ 21752761 (+) False XLOC_033634
TCONS_00065845 other downstream 3157694 22796083 ~ 22800865 (+) False XLOC_033659

Expression Profile


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