RNA id: TCONS_00065734


Basic Information

Item Value
RNA id TCONS_00065734
length 1310
RNA type mRNA
GC content 0.44
exon number 4
gene id XLOC_033597
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 19615056 ~ 19621629 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGAGATCAACAATGACGGAACAGCAGGAAGAAAAACGCTACGATCCCAACGACACGACTCTGAAGTTTGTAACGCGCAAGGATGAAATAACCCTGGATGATGACCCGGCCATCCTTCGAGCCGAGATGTCCTGTGGTCATGCTGTCACCCCAGAATCCCTGACAGGATGGTGTCGCAGTCTACTAGATCAGGGTCAGTACAAGTTCACATGCCCTGCACTTATTGGTGAAAACGCGAGACAGAAGTGCAATGCCGAATGGCCCTACGTGGAGGTGCGGAGGCTGGCTTTACTCACACAAGAGGAGCAGAGCCATTTTGAAGAGACCATGGCTGTCTTGGCTGCAGCTGAGTACTGCGAACACAAAACTTGTCCTGGCTGTCAGTCATTCGTTGAGAGAGCCGACATTACCAACCTCTGTGTCATTTGCACGATCTGCACGGCTGAGAAGGGCAGGACGTTTCAGTTCTGCTGGCAGTGTATGAAGGGATGGAAAGGTCCAGGCCCTCGATCTGACCGCTGTGACAACCCTGGCTGCACCAATCCGGACCTGGAGAAGTTGGCAAAATGTCGTGATATAACACTACCAGCGGTTCAAAACGTGAGCTGTCCCTCATTGCGAGCTTGTCCCACTTGTGGCAATCTTGTGGAGCATGACACAAGCGGCTGTAAGAACATCATATGCAATCGCTGCACGATAGAGTTCTGCTTTGTTTGCCTAAAAGTCacaaaaacatgcttaaaaacgAGCAGGCATTTCACTCTCTGTTCAGATGGAGTTGCACCACGGCAGACTTCCATTCCAAACTGGAAAAGAAATTAACATTATTGATGGAGCCAACcaaaaaaaatggcattttattCAGGAGGCACATTTGTGAGGGTTTCGGCAGGATCTATATaggtaaatttaagactttttaaatatcTTAAGACTAACTTGACTGTCAAAGTCTTAAAACAAAATGATATACTCTTTATTCAAGTTTGCTTTTTTGAGAGGGGGAAATACAAGTGAAGGTGCCAGTGTTTATATTACAGAATGGTCACATTCATCTCCATGGTCTGGAATAATTATATTAACCATGATAGAAAACCTACAGAGCTGTTGTTTCTCCAATGGACAGGCGAATTTGCATGTAAATAAGCTTACACTGGAAAACTGGAAAGCATTTTTTGTATATGGAATTTCCCCTAAAATCCAAGTCATCTCAAATGTAAAGTGAAAGTCAACACAGATCAACTGTGGtgtcaaattaaatgtaatgacAGACACAATGGTGGTTAGGCTGAcaataaacacatgaaaat

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-160728-58 Predicted to enable metal ion binding activity and ubiquitin-protein transferase activity. Predicted to act upstream of or within protein ubiquitination.

Ensembl:

ensembl_id ENSDART00000124752

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068804 lncRNA upstream 100153 19512765 ~ 19514903 (+) True XLOC_033592
TCONS_00065727 lncRNA upstream 115603 19498511 ~ 19499453 (+) True XLOC_033590
TCONS_00065726 lncRNA upstream 115661 19495958 ~ 19499395 (+) False XLOC_033590
TCONS_00065722 lncRNA upstream 130206 19484269 ~ 19484850 (+) True XLOC_033589
TCONS_00065718 lncRNA upstream 138743 19474190 ~ 19476313 (+) True XLOC_033588
TCONS_00068805 lncRNA downstream 15100 19636729 ~ 19638389 (+) True XLOC_033598
TCONS_00068806 lncRNA downstream 42407 19664036 ~ 19664661 (+) True XLOC_033599
TCONS_00065737 lncRNA downstream 117086 19738715 ~ 19746525 (+) True XLOC_033600
TCONS_00065739 lncRNA downstream 140967 19762596 ~ 19771819 (+) True XLOC_033601
TCONS_00065744 lncRNA downstream 229835 19851464 ~ 19852599 (+) False XLOC_033604
TCONS_00065733 mRNA upstream 10156 19600262 ~ 19604900 (+) True XLOC_033596
TCONS_00065732 mRNA upstream 27514 19562045 ~ 19587542 (+) True XLOC_033595
TCONS_00065731 mRNA upstream 56214 19552381 ~ 19558842 (+) True XLOC_033594
TCONS_00065730 mRNA upstream 76650 19528265 ~ 19538406 (+) True XLOC_033593
TCONS_00065728 mRNA upstream 108603 19502744 ~ 19506453 (+) False XLOC_033591
TCONS_00065736 mRNA downstream 117036 19738665 ~ 19760223 (+) False XLOC_033600
TCONS_00065738 mRNA downstream 140966 19762595 ~ 19807258 (+) False XLOC_033601
TCONS_00065740 mRNA downstream 195677 19817306 ~ 19825746 (+) True XLOC_033602
TCONS_00065741 mRNA downstream 213940 19835569 ~ 19848037 (+) True XLOC_033603
TCONS_00065742 mRNA downstream 229260 19850889 ~ 19880266 (+) False XLOC_033604
TCONS_00065712 other upstream 587986 19026314 ~ 19027070 (+) True XLOC_033584
TCONS_00065710 other upstream 599545 19014767 ~ 19015511 (+) True XLOC_033581
TCONS_00065709 other upstream 606477 19007840 ~ 19008579 (+) True XLOC_033580
TCONS_00065656 other upstream 2267917 17346399 ~ 17347139 (+) True XLOC_033546
TCONS_00065651 other upstream 2354288 17255795 ~ 17260768 (+) False XLOC_033545
TCONS_00065774 other downstream 845920 20467549 ~ 20471363 (+) False XLOC_033616
TCONS_00065791 other downstream 1023552 20645181 ~ 20651731 (+) False XLOC_033625
TCONS_00065803 other downstream 2010471 21632100 ~ 21752761 (+) False XLOC_033634
TCONS_00065804 other downstream 2099499 21721128 ~ 21752761 (+) False XLOC_033634
TCONS_00065845 other downstream 3174454 22796083 ~ 22800865 (+) False XLOC_033659

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000344_01301188_01303080.mRNA True 994 mRNA 0.47 5 CI01000344 1301154 ~ 1303176 (+)