RNA id: TCONS_00065770


Basic Information

Item Value
RNA id TCONS_00065770
length 6837
RNA type mRNA
GC content 0.42
exon number 24
gene id XLOC_033614
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 20383841 ~ 20436781 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTAAATCATTGATGTGTCAGcgttttgttgctgttttatgttatttatttgatACTTGTGTAAATTGCATGAGCATTAGACGAGACAAGTTTCGACCATGTGCGTTCGGAGGAACTCTGCCCACATCCGTTGGCGCATGACGTCAAAGTACACACCTGTGGCGCATTGTTTTTCGAAAATATCAAGGATGCATCAAAAACAGACCACTATTTAGTGCAGCAGTGTAGTGTTAAATAACTACCACATGGTCTGACCAAGAAGTTTAAAATCTAATCCGTCTGAGGGAAACATCAGccagaaaacacaaacaaaacggCATCTCTTCCGGTGCAGTTCACTCGCTCGGCTCGTTCACACTAGTATGATGTTTATTGCAGCTTTACCGTCTACGATTTTCATTCACTTTTTAGGCGGAATATATTAGTGGAATAATGTAGGGAATACTGGATGAGGGTATTGTGGGCACTTTCGAATACAGCCATAGACTTGAGAGTTCAGCCAAAGTTGAACTTGTGCCATGATTGGACTGATGGGAGTTTTAAACCAGAGTGTGACTGCGGCTCCCTCTTCTGGACAGTCCAGAGAAGCACAGCAGCTCGCTGTGATGCAACAAAACCCTTCAAAACGTCCAGGATTTCTAAGCAGGAAGAACGTGAGCTTGTCAACCTCAAACTGTCAGAGTGTGATAGCGAGAGGATTCACATCACGAGCTGAAGAGCTGCTCTCTGCTGCTGATGGAGCTCTTTTCTGAGGCTGTGGAATATCTGAAGGCTTATGGCATCTCACCTGtgACTGAGGATGAAATGATGGATTCTGACCTACTACATGATGTGTTCCCTGAGGAGTCAGACTGGGGGTCTCATGGCTCTATGCAAACTGAACCATGTTTGCCATCCACACCAACAAACGATAACCCAGATGACCTGCTTCAGAAGAGAATGGTCGTTTTGAAAAGGGTTTTGCTCAGTGAGGAGATCTACCTGATGGAGCTTGAAACGCTGCTCACGCCCATGAAAGCTCTGAAGGCATCAGCGGGTACCTCACAACCCGTTTTGTCCACTGAGCAAGTTCAGACAGTGTTTTATCAAGTGCCTGAACTCAGAGATCTGCACCGGCAGTTTTACACAAGCCTTCAAACTAAACTGCATCCTGATAACGTAATGGGTCAGGGGTCACAACAAAGCCTCGGAAGGGATGAGGGCCCGGTGATGCATTACCAAGGGGAGCATCATTTATCCGTGGGAGATGTCTTTCTGAAGTTTGTCAATCAGTTAGGAGTGTACCGGGGCTTTATTGACAACTATGAGAACGCAGTGAAGATTGTGCAGAAGTGTATGCTGTCAGACCAACGCTTCCGGATACTTGCAGAGAGTATGATGTCCTCCAAGAGCTCAGACAATGTGAAAACTAAATATACCTTTGAAGCTCTCCTGTACAAGCCGTTAGACAGAGTGATGAAAACCACCCTCGTCTTGCACGACTTGTGGAAGCACACGCCCCCCGAACACCCTGACAGCATCACACTGCAGGAAGCGCTCCGTCTTTCGAGCAGCTTTATGTCTGGGGTGAATGAAAGGTCGCAGTGCAAACAGCCAGTCATGCTGTGCAGAGGAGAGAGACGTCAACTGATGCGTGATGGGTTTGTGGTTGATGTGTGTGAAAGTGGGCACAACCTGAGACACCTCTTCCTGTACACAGACATGCTGCTGTGTGCTAAACTGACAAACGCAGGGAGGCAGGCGCAGTACAGGTTTTGCTGGTATCTGCCACTGGTGGGCCTAAAGCTCCATTGGACAGCTGAACACCTGCCCTCATCAGAATACCAAATGAAAATCAGTAAAACCAGAGTCAAAATGTACCAGCTCAAACAAGCACTCCTGCAACACATGAAAGGAAGCAAAGGGTCAGTTTCTCGTGCTGTTGATCGATTGAGGCGGAAACTTGAAGAATGTGAGATCTGGCTTTTAACAAACACACCATCTTTTACTTTAGACCTACACAGCACCAGTGGAAAGAGTCACACTGTCCGACTGCTTTCTTTGTATGACCTGAATGAGTGGAAAGACGCCATTGAGAAACAGTGCGGAAACTGTATAGAGACGGTTCCTCCAGACCTACTTTCTGTCACCAGTTCCTGCATCAAACTCAGAATGACTCAACAACCTCCTCTTCACTGTGTTCAGTCCAATGAGAGTGCACAGATATGTGGGAGCTTATATGTGATGGTTCAGTCTGCGTGTGGTCTACAACACCCCAGCAGTGCGTATGTTTGTGTGGAAGTAGACGGCTTTGAGTGTTACGACAGGCGAAAACAAACCAGCCTTTCGGCCTTCTGTGTTACACCACAATGGGATGAGGAGCTTGTGTTTATAGTGGACGGAGCTAAGCAGCTGTTCCTGGTTTTCGTGTGTCAGTACGAGAATGACACACAGAACGACATCGTGGGCAGAACAGTCTTAAATTTGGACCCAGACAACATGTTTAAGAAATGGAAAAAGGTCACCTGTTCTTTGGGCCATGTTGACGTAACCTTGTCACTCAAGTATGTGCCCCACCCTCTGGAGCCTCCAAGCACCACCCCTATCCTGCAGGAACCAGTGTTCTGTGTGCCCATTGGACAAGTGGCAATGCAAGAGAGTGTGCTGGTCCCACACATTGTCCGTTCCTGTGTGGAGGAGGTTGAGAGAAGGGGTCTGAAAGAAGAAGGCATCTACAGAATTTCAGGAGCAAGCACGGAGATACAAGcactaaaatatgcatttaacactaATTACCGCGAGGCTGTGAGTAAACTGAGGAGTGTTGATGTGAATGCAGTCTCGGGCACCCTTAAACTCTACTTTAGAGAACTTCCTTTACCTCTTATACCTTGTGAGCATTTCAGTGAGCTTTCAGATGCACTAGACATCGCTGATCCATTTGTCAGAGCAGACAGCTTGCTGAGTCTGCTGCAGTCTCTACCAGATGTGAACCGCAACACTCTGCTCTTCCTCTTACACCACCTGAGACGAGTTGCAGAGAGGAAGGAAGAGAATAAAATGTCCTTGAGTAATTTGGCCACAGTGTTCGGCCCCAGTCTCTTGCGCCCCCCAGTGTCTCGTGTTGACATATCCCAAGAAGTGGAAGTTCAGGTCCAGGTGATTTTTCTCTATCTGCAGTTTCAAAACCTTCCAGAAGCTCTCCTCACAAAACATCTGGACATTGATGACCTAGAGTCATGAGCCGTCAACAACTGGACTCCTGTGTTTCCACATAACCATGGTGACCAGGTTGGACATGCCGTTGGGTAGTACCGCTCACGTTTACTGGCCTGACTCGTCTTTGAAGTACCTGAGAGAGGATCTTGTGTTTCCTGAGAGGAGCTCAGTGTGACGTTTTCAGCCTCATGGTCCTCCTCAAGGTGCGTTTCTGTGTTTTTTCCTTGTATGTCCTGAGTCCCcctttgattgtgtgtgtgctcTGATCCTGATTGTGGTGTTAAATGATGCTGCTTATGTGccatgtgtgtatgtttatgtagtCTGTGTGGCACAGACTGCAGTTTGTCAAGATGTGGAGGTGTGTATTCCTCATAAGAGTTTGGGTGAGATGGTTTCTGTGCAGTGGTGTTTCCCTGTAGGCACTTCCCTCGGGTGTCCTGCCCGCGGAACCCTCTCAATTTGGGGCTCCAGTGTTCTCTCCATTGCAAGGCCATTGTGGTGCGGTCTGCAACTAATCTCCTTTCCTCAGGGACCCAACTACGCCTGCTTTCCTCTGCACCGATCAGGAGAAAGGTTCGGCCAATCTGCAGAGCAGGGCAGCCGCAGCTCACATCCCGATCTGGAACCCAAAGGGCCTGAAGGCCTCGCTTTACATGTGAAGAGCCCATGCGAAAAACTGACTGCACCAGTATGGAAAACTGCCACCAGGGACCAGAGCGTTCCTTACTTTTTACCTGCACCTTCAATACTGGGATGAAAGTATGACAGGGACAAGGGACACAAACAATGAAGATGAGAATGTTAATACGACTCAAGAATTCACTATCCAGATTTATTTTCTGAACAAGTAATGTGGCAAAATTCAGCCAACAAGAAATCTGTGTTCTTGACATAATAAAAGGTCTTAAAACTCTTTTTTAGGTTTGATTAACAAGGAACATTTCTGCCATGAAACTCTATGTGCGCACAGGCTGATTGGTCACCTAATCTGCCCCTGTGTCATTGAACTACATGGCGCAGGAGATTGGATGCTGCCCCCTttgcagccaatgagcttgctcctcatCAGTTTAAATGCTCTGCGCCATTTTACGCTGTTAAGCTGTGGCACGTTTTCGGTGACCCTCCTCCACTccagcttcatttgtgtttagaTCTGCAACAGGATTTACTTATATATTACGTTTGCAAGCGGAGCATGTTATATTCTTAGACggcatgtctgtgtatatactTTCAGTAGCAGATTTCAATACTTGCTCTGCCGTAATAATCAAAGAAGCAGCAGCAGCGCAGCAGATCTGTTCTTCCAAGACtaaatacatcaacattgccatataaATATTCATTACCATAATAAATCCCCAGAGTGTTCAGAAATAAGAAACTCAAATTTCATACGAATTTTGCACAGCTTCGGAGTGagtaaattacaatacaaaatctATACATTTAACTTTATCTCACAATTTAGGTCTGTTTACACTAAGAACAATAGCTTGTTAGCTTGTAATAGTTGTTCTGTTATCATAAGCATGCACTGCTGTTTTGTAATCTGACACTAAAAGCTTGTGTTTATCAGTGCAGATAGAATTGTGGTTAAGCAGATGCACATTGACATCAGTGTGGCTGCACTTGTGGTGTTTTCTTCTCACATTGAGGCCCTTTGCTAattctgtttttctttctcactttattctgcaatgtggaagtagcccatgttttttttctgaaaaattttaaaaattctgaTTCCTTTGTATATGGaggaatttacaaaaaaaaacagcagtaaaAGTTCAAGCTACTTGAACTCCCTTGAACTGTTTTGAATGGCTAAAAGTCGATGGAAATGATCAAGACTGAAAGTCTTTGGACTGATTCTTATTAGCTGTCAATATTTTATATCATTCATTACCTAGAAAAAAAGGTAATGAATGAAAAAGGATTATATCAGGATGGAGTTCCCTGTTTTTATAGAAGTAGTTCAATAGTTATTTTAAAGCTTTCATTATTGGCATTGGtgtaaaatgacttttttttttctttcattctgaGGCCAAAAATAACTTGATTAGTAATATCATCtatagagctgcgcatcgatggattgctcttcagtgtttggactctcagtagtgactattaaaccagactgaactgagctaaactgaactgaacttaagctctgaaaatttaactacactgtttcaatttactatatccttctatgtgaagctgctttgacacaatctacattgtaaaagcgctatacaaataaaggtgaattgaattgaattgaatagtaaTAGACATACCATAATCCTTGAGACAATATGTTTCTAAATTCATTCTGACTCTTGCTTGGGAAGGTGGACAATAAGAAAAACACTCTTCACCTGTGGTGAGAAATGaagaaacacattttaaaagcagTAATGGACCATTGCAAAATGGTAATCATGCTTATGATTTCAAAACATTTTGTAATCTATTTTAAATAGCACTTTGTACAAAGTAGACCACCAGTATCAATCTTTCCAGCAAGAGAAAGTGAAGGGCTGTTCTATATCTCTATTCAAGCATTTAATAGAGCTCGGGAGTCCAGGAGTGTTTTTTTTGTCTACAAGTGAAAGGCAGTCCTGGCGTCTCTGGAGACCTGGAGTTGGCCTGTCTACTCAGAGCAGATCATAGTAATGTGTGTGAAATCAATCAGTAGTAATGGACTGCACTGCTCTTTTTTAGATATAAGCAAAGCAGCTGCAGCAGGTATAAATTTCTATAATCATAGCATACTGTACAGTATTCTGTTGCTGTCAGTGGTAAAACATGCTATATTCAGAAAGAAAATATCTGCTCTGGGGTTTTTTCTGTCTGTTGGTCACCAAGCCAGATTTCAACATAGTATCACCCTGGAAAATATTTCACTTAGTCAGTGGCTTTTTTTATTATCTGAGTTTGGTGTCAGTACAAGCTAGTAGTGAGAGTGGAATCAGACGACAAtaacaacagtttaaaaaaatgtctagGTCTTAGCCGGTATCATAAAACAAATGGCAAAGATGTAGACACATAGGGGAAAATATAAATTAGAGTTTAGAATACAGGAAGATGCTATAGATCTTCTACatataaatactttatttatattacaaGATGTTTTTATTATGATAATCACCTGTATACTACAAATAAAATTGCTTTACTTCAGGTTAAATGACAATTTAAAGCTGGAGAATAGCATTCTGTTAGAAGGCATGAATGATTTCAATTGTGAATCTCAAAGAGAGacatattaatattttgttttgcttagaACAGCACatttgttaaaacttttttttgctaGGGAAATTAATTTAGCCAGAAAGCTAGTGATACTGAAGggaaacattataaaaataatacagcTACATTCAGCTTGTGCATACCTCAACACATTTGTTACaaacaaaatgttacaaaatagaTTCACTAGGGGGCAGTAAATCACTACTAATATAATTATATAGCATATATAAGTTGTttgaacatttgttttcaaatgaaaatatgccagttgaatttatttacattaaaaagaaaactACCCAAATGTCCAACTTTTGATCACTGTACATATATGAAATTCACTT

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0007165 signal transduction biological_process
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-592 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within positive regulation of GTPase activity and signal transduction. Predicted to be located in axon and dendritic spine.

Ensembl:

ensembl_id ENSDART00000052906

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065757 lncRNA upstream 246372 20132360 ~ 20137469 (+) True XLOC_033607
TCONS_00065746 lncRNA upstream 519462 19861897 ~ 19864379 (+) False XLOC_033604
TCONS_00065744 lncRNA upstream 531242 19851464 ~ 19852599 (+) False XLOC_033604
TCONS_00065739 lncRNA upstream 612022 19762596 ~ 19771819 (+) True XLOC_033601
TCONS_00065737 lncRNA upstream 637316 19738715 ~ 19746525 (+) True XLOC_033600
TCONS_00068808 lncRNA downstream 16345 20453126 ~ 20464807 (+) False XLOC_033615
TCONS_00068809 lncRNA downstream 17060 20453841 ~ 20464807 (+) True XLOC_033615
TCONS_00065777 lncRNA downstream 39507 20476288 ~ 20477121 (+) True XLOC_033616
TCONS_00068810 lncRNA downstream 74980 20511761 ~ 20517266 (+) False XLOC_033618
TCONS_00068567 lncRNA downstream 79227 20516008 ~ 20517831 (+) True XLOC_033618
TCONS_00065765 mRNA upstream 13972 20344050 ~ 20369869 (+) False XLOC_033612
TCONS_00065769 mRNA upstream 13972 20344507 ~ 20369869 (+) True XLOC_033612
TCONS_00065767 mRNA upstream 13974 20344232 ~ 20369867 (+) False XLOC_033612
TCONS_00065766 mRNA upstream 13975 20344222 ~ 20369866 (+) False XLOC_033612
TCONS_00065764 mRNA upstream 14084 20344032 ~ 20369757 (+) False XLOC_033612
TCONS_00065773 mRNA downstream 30768 20467549 ~ 20471363 (+) False XLOC_033616
TCONS_00065775 mRNA downstream 34534 20471315 ~ 20502769 (+) False XLOC_033616
TCONS_00065776 mRNA downstream 39007 20475788 ~ 20502232 (+) False XLOC_033616
TCONS_00065778 mRNA downstream 66563 20503344 ~ 20508771 (+) False XLOC_033617
TCONS_00065779 mRNA downstream 68530 20505311 ~ 20508763 (+) True XLOC_033617
TCONS_00065712 other upstream 1356771 19026314 ~ 19027070 (+) True XLOC_033584
TCONS_00065710 other upstream 1368330 19014767 ~ 19015511 (+) True XLOC_033581
TCONS_00065709 other upstream 1375262 19007840 ~ 19008579 (+) True XLOC_033580
TCONS_00065656 other upstream 3036702 17346399 ~ 17347139 (+) True XLOC_033546
TCONS_00065651 other upstream 3123073 17255795 ~ 17260768 (+) False XLOC_033545
TCONS_00065774 other downstream 30768 20467549 ~ 20471363 (+) False XLOC_033616
TCONS_00065791 other downstream 208400 20645181 ~ 20651731 (+) False XLOC_033625
TCONS_00065803 other downstream 1195319 21632100 ~ 21752761 (+) False XLOC_033634
TCONS_00065804 other downstream 1284347 21721128 ~ 21752761 (+) False XLOC_033634
TCONS_00065845 other downstream 2359302 22796083 ~ 22800865 (+) False XLOC_033659

Expression Profile

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