RNA id: unassigned_transcript_20


Basic Information

Item Value
RNA id unassigned_transcript_20
length 72
RNA type tRNA
GC content 0.56
exon number 1
gene id trnae-uuc_18
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 7172937 ~ 7173008 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCCTTATGGTCTAGCGGTTAGGATTCCTGGTTTTCACCCAGGCGGCCTGGGTTCAACTCCCGGTATGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3320 lncRNA upstream 24453 7147274 ~ 7148484 (+) False G2374
TU3327 lncRNA upstream 24453 7147274 ~ 7148484 (+) True G2374
TU3334 lncRNA upstream 24453 7147274 ~ 7148484 (+) False G2374
TU3301 lncRNA upstream 86678 7085736 ~ 7086259 (+) True G2361
TU3351 lncRNA downstream 68813 7241821 ~ 7243472 (+) True G2386
TU3352 lncRNA downstream 68813 7241821 ~ 7243472 (+) False G2386
TU3407 lncRNA downstream 212124 7385132 ~ 7385353 (+) True G2428
TU3471 lncRNA downstream 381032 7554040 ~ 7557441 (+) True G2486
TU3497 lncRNA downstream 415635 7588643 ~ 7591076 (+) True G2505
XM_039810088.1 mRNA upstream 409140 6727928 ~ 6763797 (+) False LOC120564849
XM_039810078.1 mRNA upstream 409140 6729858 ~ 6763797 (+) True LOC120564849
XM_039810077.1 mRNA upstream 449979 6695584 ~ 6722958 (+) True LOC120564833
XM_039815363.1 mRNA upstream 513618 6591436 ~ 6659319 (+) True LOC120568096
XM_039810365.1 mRNA upstream 643989 6510225 ~ 6528948 (+) True LOC120565047
XM_039810376.1 mRNA downstream 65063 7238071 ~ 7239593 (+) True LOC120565053
XM_039815515.1 mRNA downstream 217091 7390099 ~ 7437258 (+) True LOC120568176
XM_039819062.1 mRNA downstream 439915 7612923 ~ 7640109 (+) True pus10
XM_039819288.1 mRNA downstream 520577 7693585 ~ 7703831 (+) True LOC120570741
XM_039807381.1 mRNA downstream 545948 7718956 ~ 7743994 (+) True LOC120563246
unassigned_transcript_19 other upstream 448 7172418 ~ 7172489 (+) True trnae-uuc_17
unassigned_transcript_18 other upstream 1467 7171399 ~ 7171470 (+) True trnae-uuc_16
unassigned_transcript_17 other upstream 1974 7170892 ~ 7170963 (+) True trnae-uuc_15
unassigned_transcript_16 other upstream 2481 7170385 ~ 7170456 (+) True trnae-uuc_14
unassigned_transcript_15 other upstream 4734 7168132 ~ 7168203 (+) True trnae-uuc_13
unassigned_transcript_21 other downstream 1870 7174878 ~ 7174949 (+) True trnae-uuc_19
unassigned_transcript_22 other downstream 2376 7175384 ~ 7175455 (+) True trnae-uuc_20
unassigned_transcript_23 other downstream 7436 7180444 ~ 7180515 (+) True trnae-uuc_21
unassigned_transcript_24 other downstream 11121 7184129 ~ 7184200 (+) True trnae-uuc_22
unassigned_transcript_25 other downstream 11628 7184636 ~ 7184707 (+) True trnae-uuc_23