Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00066388 |
| length | 1729 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 14 |
| gene id | XLOC_033935 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007118.7 |
| NCBI id | CM002891.2 |
| chromosome length | 74282399 |
| location | 38750871 ~ 38760158 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0030168 | platelet activation | biological_process |
| GO:0030194 | positive regulation of blood coagulation | biological_process |
| GO:0007596 | blood coagulation | biological_process |
| GO:0006508 | proteolysis | biological_process |
| GO:0062023 | collagen-containing extracellular matrix | cellular_component |
| GO:0005576 | extracellular region | cellular_component |
| GO:0005615 | extracellular space | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| GO:0004252 | serine-type endopeptidase activity | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0008233 | peptidase activity | molecular_function |
| GO:0008236 | serine-type peptidase activity | molecular_function |
| id | description |
|---|---|
| ko04072 | Phospholipase D signaling pathway |
| ko04080 | Neuroactive ligand-receptor interaction |
| ko04810 | Regulation of actin cytoskeleton |
| ko04610 | Complement and coagulation cascades |
| ko04611 | Platelet activation |
| ko05200 | Pathways in cancer |
| ko05171 | Coronavirus disease - COVID-19 |
| ko05130 | Pathogenic Escherichia coli infection |
| ko01002 | Peptidases and inhibitors |
| ko04147 | Exosome |
| ko00536 | Glycosaminoglycan binding proteins |
| id | description |
|---|---|
| ZDB-GENE-030131-4606 | Predicted to enable serine-type endopeptidase activity. Acts upstream of or within blood coagulation. Predicted to be located in extracellular region. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in liver and yolk syncytial layer. Human ortholog(s) of this gene implicated in several diseases, including X-linked recessive disease (multiple); appendicitis; artery disease (multiple); autoimmune disease (multiple); and thrombophilia (multiple). Orthologous to human F2 (coagulation factor II, thrombin). |
| ensembl_id | ENSDART00000114238 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00066384 | lncRNA | upstream | 60459 | 38688249 ~ 38690412 (+) | False | XLOC_033933 |
| TCONS_00066383 | lncRNA | upstream | 60459 | 38688249 ~ 38690412 (+) | False | XLOC_033933 |
| TCONS_00066382 | lncRNA | upstream | 60459 | 38688249 ~ 38690412 (+) | False | XLOC_033933 |
| TCONS_00068915 | lncRNA | upstream | 60459 | 38688480 ~ 38690412 (+) | False | XLOC_033933 |
| TCONS_00066381 | lncRNA | upstream | 61321 | 38687268 ~ 38689550 (+) | False | XLOC_033933 |
| TCONS_00066395 | lncRNA | downstream | 19795 | 38779546 ~ 38780108 (+) | True | XLOC_033936 |
| TCONS_00066421 | lncRNA | downstream | 644494 | 39404245 ~ 39406761 (+) | False | XLOC_033944 |
| TCONS_00066422 | lncRNA | downstream | 644518 | 39404269 ~ 39406453 (+) | True | XLOC_033944 |
| TCONS_00066424 | lncRNA | downstream | 650434 | 39410185 ~ 39414434 (+) | False | XLOC_033945 |
| TCONS_00066427 | lncRNA | downstream | 654151 | 39413902 ~ 39418785 (+) | False | XLOC_033945 |
| TCONS_00066387 | mRNA | upstream | 674 | 38744924 ~ 38750197 (+) | True | XLOC_033934 |
| TCONS_00066385 | mRNA | upstream | 13153 | 38716048 ~ 38737718 (+) | False | XLOC_033933 |
| TCONS_00066380 | mRNA | upstream | 20262 | 38685654 ~ 38730609 (+) | False | XLOC_033933 |
| TCONS_00066386 | mRNA | upstream | 29302 | 38717624 ~ 38721569 (+) | True | XLOC_033933 |
| TCONS_00066379 | mRNA | upstream | 65534 | 38680083 ~ 38685337 (+) | True | XLOC_033932 |
| TCONS_00066393 | mRNA | downstream | 2292 | 38762043 ~ 38785745 (+) | False | XLOC_033936 |
| TCONS_00066394 | mRNA | downstream | 10416 | 38770167 ~ 38783502 (+) | False | XLOC_033936 |
| TCONS_00066396 | mRNA | downstream | 48276 | 38808027 ~ 38810706 (+) | False | XLOC_033937 |
| TCONS_00066397 | mRNA | downstream | 49490 | 38809241 ~ 38810611 (+) | True | XLOC_033937 |
| TCONS_00066398 | mRNA | downstream | 52049 | 38811800 ~ 38822387 (+) | True | XLOC_033938 |
| TCONS_00066378 | other | upstream | 67654 | 38680039 ~ 38683217 (+) | False | XLOC_033932 |
| TCONS_00066376 | other | upstream | 72339 | 38678418 ~ 38678532 (+) | True | XLOC_033931 |
| TCONS_00066373 | other | upstream | 101342 | 38649136 ~ 38649529 (+) | True | XLOC_033929 |
| TCONS_00066366 | other | upstream | 223505 | 38511264 ~ 38527366 (+) | True | XLOC_033925 |
| TCONS_00066360 | other | upstream | 326862 | 38401094 ~ 38424009 (+) | False | XLOC_033924 |
| TCONS_00066429 | other | downstream | 658811 | 39418562 ~ 39429027 (+) | False | XLOC_033945 |
| TCONS_00066460 | other | downstream | 931281 | 39691032 ~ 39695827 (+) | True | XLOC_033949 |
| TCONS_00066462 | other | downstream | 953464 | 39713215 ~ 39713623 (+) | False | XLOC_033951 |
| TCONS_00066463 | other | downstream | 953738 | 39713489 ~ 39713774 (+) | True | XLOC_033951 |
| TCONS_00066478 | other | downstream | 1694961 | 40454712 ~ 40460332 (+) | False | XLOC_033959 |
