Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00066384 |
| length | 1485 |
| lncRNA type | read_through |
| GC content | 0.35 |
| exon number | 2 |
| gene id | XLOC_033933 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007118.7 |
| NCBI id | CM002891.2 |
| chromosome length | 74282399 |
| location | 38685654 ~ 38737718 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0071277 | cellular response to calcium ion | biological_process |
| GO:0006906 | vesicle fusion | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0017156 | calcium-ion regulated exocytosis | biological_process |
| GO:0017158 | regulation of calcium ion-dependent exocytosis | biological_process |
| GO:0014059 | regulation of dopamine secretion | biological_process |
| GO:0043005 | neuron projection | cellular_component |
| GO:0030424 | axon | cellular_component |
| GO:0045202 | synapse | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0070382 | exocytic vesicle | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| GO:0001786 | phosphatidylserine binding | molecular_function |
| GO:0005544 | calcium-dependent phospholipid binding | molecular_function |
| GO:0000149 | SNARE binding | molecular_function |
| GO:0030276 | clathrin binding | molecular_function |
| id | description |
|---|---|
| ko04131 | Membrane trafficking |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00066375 | lncRNA | upstream | 14043 | 38667150 ~ 38674206 (+) | True | XLOC_033930 |
| TCONS_00066371 | lncRNA | upstream | 105802 | 38578921 ~ 38582447 (+) | True | XLOC_033927 |
| TCONS_00068913 | lncRNA | upstream | 341770 | 38315989 ~ 38346479 (+) | False | XLOC_033922 |
| TCONS_00066390 | lncRNA | downstream | 60504 | 38750916 ~ 38753487 (+) | False | XLOC_033935 |
| TCONS_00066392 | lncRNA | downstream | 61694 | 38752106 ~ 38752528 (+) | True | XLOC_033935 |
| TCONS_00066395 | lncRNA | downstream | 89134 | 38779546 ~ 38780108 (+) | True | XLOC_033936 |
| TCONS_00066421 | lncRNA | downstream | 713833 | 39404245 ~ 39406761 (+) | False | XLOC_033944 |
| TCONS_00066422 | lncRNA | downstream | 713857 | 39404269 ~ 39406453 (+) | True | XLOC_033944 |
| TCONS_00066379 | mRNA | upstream | 2912 | 38680083 ~ 38685337 (+) | True | XLOC_033932 |
| TCONS_00066377 | mRNA | upstream | 3095 | 38680034 ~ 38685154 (+) | False | XLOC_033932 |
| TCONS_00066374 | mRNA | upstream | 10159 | 38667066 ~ 38678090 (+) | False | XLOC_033930 |
| TCONS_00066372 | mRNA | upstream | 93647 | 38588866 ~ 38594602 (+) | True | XLOC_033928 |
| TCONS_00066370 | mRNA | upstream | 105707 | 38577933 ~ 38582542 (+) | False | XLOC_033927 |
| TCONS_00066385 | mRNA | downstream | 25636 | 38716048 ~ 38737718 (+) | False | XLOC_033933 |
| TCONS_00066386 | mRNA | downstream | 27212 | 38717624 ~ 38721569 (+) | True | XLOC_033933 |
| TCONS_00066387 | mRNA | downstream | 54512 | 38744924 ~ 38750197 (+) | True | XLOC_033934 |
| TCONS_00066388 | mRNA | downstream | 60459 | 38750871 ~ 38759751 (+) | False | XLOC_033935 |
| TCONS_00066389 | mRNA | downstream | 60459 | 38750871 ~ 38760158 (+) | False | XLOC_033935 |
| TCONS_00066378 | other | upstream | 5032 | 38680039 ~ 38683217 (+) | False | XLOC_033932 |
| TCONS_00066376 | other | upstream | 9717 | 38678418 ~ 38678532 (+) | True | XLOC_033931 |
| TCONS_00066373 | other | upstream | 38720 | 38649136 ~ 38649529 (+) | True | XLOC_033929 |
| TCONS_00066366 | other | upstream | 160883 | 38511264 ~ 38527366 (+) | True | XLOC_033925 |
| TCONS_00066360 | other | upstream | 264240 | 38401094 ~ 38424009 (+) | False | XLOC_033924 |
| TCONS_00066429 | other | downstream | 728150 | 39418562 ~ 39429027 (+) | False | XLOC_033945 |
| TCONS_00066460 | other | downstream | 1000620 | 39691032 ~ 39695827 (+) | True | XLOC_033949 |
| TCONS_00066462 | other | downstream | 1022803 | 39713215 ~ 39713623 (+) | False | XLOC_033951 |
| TCONS_00066463 | other | downstream | 1023077 | 39713489 ~ 39713774 (+) | True | XLOC_033951 |
| TCONS_00066478 | other | downstream | 1764300 | 40454712 ~ 40460332 (+) | False | XLOC_033959 |
