RNA id: TCONS_00066377


Basic Information

Item Value
RNA id TCONS_00066377
length 1554
RNA type mRNA
GC content 0.48
exon number 11
gene id XLOC_033932
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 38680034 ~ 38685337 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGAAGAAGCGGCATTTCAAGATGTCGTCGCTGAATGACAGATCAGTTTGGGATGAGGTGGAGgATGGCATCGGAGAGGAAGTCCTTAAGATGTCCACTGAAGAGATTGTTCAGAGGACTCGTCTTTTGGACAGTGAGATTAAGATCATGAAGAGTGAGGTTCTGCGTGTCACACACGAGCTGCAGGCGATGAAGGACAAAATCAAGGAGAACACAGAGAAAATCAAAGTGAACAAGACTCTGCCCTACCTCGTCTCAAATGTCATAGAGCTGCTGGATGTAGATCCTAATGACCAAGAGGAGGATGGAGCCAACATTGATCTGGACTCTCAGAGGAAGGGCAAGTGTGCTGTCATCAAAACCTCCACACGGCAGACGTATTTCTTGCCTGTGATTGGTTTGGTGGATGCTGAGAAACTGAAACCTGGTGATCTGGTGGGTGTGAATAAGGACTCCTATCTGATTTTGGAGACTCTACCCACCGAGTATGACTCTCGTGTGAAAGCAATGGAAGTGGATGAGAGGCCTACAGAGCAGTACAGTGACATCGGTGGCCTTGACAAACAAATTCAAGAGCTGGTGGAGGCGATAGTTCTGCCCATGAACCACAAAGAGAAATTTGAGAATCTGGGCATCCAGCCACCAAAGGGAGTTCTTATGTACGGACCACCAGGCACAGGAAAGACCCTGCTGGCCAGAGCCTGTGCAGCCCAAACCAAGGCAACCTTTTTGAAGTTGGCTGGCCCTCAACTGGTCCAGATGTTTATTGGTGATGGTGCCAAATTGGTGCGGGATGCATTTGCTTTGGCTAAGGAGAAGGCTCCCTCCATCATCTTCATTGATGAGTTGGATGCTATTGGCACCAAGCGCTTTGACAGTGAGAAGGCTGGCGACCGAGAGGTGCAAAGGACCATGCTGGAGCTGCTCAATCAGTTAGATGGCTTCCAGCCCAACATGCAAGTGAAGGTGATTGCTGCCACTAACAGGGTGGATATCCTGGACCCAGCTCTGCTTCGTTCAGGTCGTCTGGATCGTAAGATTGAGTTCCCTATGCCCAACGAGGAGGCTCGTGCTCGCATTATGCAGATCCATTCTCGCAAGATGAATGTCTGCCCTGATGTGAACTTTGAGGAACTGGCACGATGTACTGATGACTTCAATGGAGCTCAGTGTAAAGCAGTTTGTGTTGAGGCTGGTATGATTGCGCTGCGGCGTGGGGCAACTGAGCTCAACCATGAGGACTACATGGAGGGCATTCTGGAGGTGCAGGCAAAGAAGAAGGCCAATTTGCAGTACTATGCTTAAAGAGGAggactgtatgtatgtgtgtgtgtttgtgcgtatgTGAGCATCTAACAGCAGGATCCAGCACACCTGTAAACTTGTGCTTATCAGATCCAGTGCTGCTCTGAGTAATGACCCGTGTTCTGATGGAGACAGATCAGCCAAATTAGACTGGACTGCCTCACAGTGAAGACTTatggaactttttttttcagttaacctTTATGTTTGTTTCTCAGTTCattaaacaaaaatctttttttcactata

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0045899 positive regulation of RNA polymerase II transcription preinitiation complex assembly biological_process
GO:0008540 proteasome regulatory particle, base subcomplex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko05169 Epstein-Barr virus infection
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05017 Spinocerebellar ataxia
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko03051 Proteasome

ZFIN:

id description
ZDB-GENE-030131-666 Predicted to enable ATP binding activity; hydrolase activity; and proteasome-activating activity. Involved in lens development in camera-type eye and semicircular canal fusion. Predicted to be located in cytoplasm and nucleus. Predicted to be part of proteasome regulatory particle, base subcomplex. Is expressed in inner ear. Used to study cataract and sensorineural hearing loss. Orthologous to human PSMC3 (proteasome 26S subunit, ATPase 3).

Ensembl:

ensembl_id ENSDART00000171691

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00066375 lncRNA upstream 5828 38667150 ~ 38674206 (+) True XLOC_033930
TCONS_00066371 lncRNA upstream 97587 38578921 ~ 38582447 (+) True XLOC_033927
TCONS_00068914 lncRNA upstream 333555 38315989 ~ 38346479 (+) False XLOC_033922
TCONS_00066381 lncRNA downstream 2114 38687268 ~ 38689550 (+) False XLOC_033933
TCONS_00066384 lncRNA downstream 3095 38688249 ~ 38690412 (+) False XLOC_033933
TCONS_00066383 lncRNA downstream 3095 38688249 ~ 38690412 (+) False XLOC_033933
TCONS_00066382 lncRNA downstream 3095 38688249 ~ 38690412 (+) False XLOC_033933
TCONS_00068915 lncRNA downstream 3326 38688480 ~ 38690412 (+) False XLOC_033933
TCONS_00066374 mRNA upstream 1944 38667066 ~ 38678090 (+) False XLOC_033930
TCONS_00066372 mRNA upstream 85432 38588866 ~ 38594602 (+) True XLOC_033928
TCONS_00066369 mRNA upstream 97416 38577869 ~ 38582618 (+) False XLOC_033927
TCONS_00066370 mRNA upstream 97492 38577933 ~ 38582542 (+) False XLOC_033927
TCONS_00066368 mRNA upstream 146338 38529263 ~ 38533696 (+) True XLOC_033926
TCONS_00066380 mRNA downstream 500 38685654 ~ 38730609 (+) False XLOC_033933
TCONS_00066385 mRNA downstream 30894 38716048 ~ 38737718 (+) False XLOC_033933
TCONS_00066386 mRNA downstream 32470 38717624 ~ 38721569 (+) True XLOC_033933
TCONS_00066387 mRNA downstream 59770 38744924 ~ 38750197 (+) True XLOC_033934
TCONS_00066388 mRNA downstream 65717 38750871 ~ 38759751 (+) False XLOC_033935
TCONS_00066376 other upstream 1502 38678418 ~ 38678532 (+) True XLOC_033931
TCONS_00066373 other upstream 30505 38649136 ~ 38649529 (+) True XLOC_033929
TCONS_00066366 other upstream 152668 38511264 ~ 38527366 (+) True XLOC_033925
TCONS_00066360 other upstream 256025 38401094 ~ 38424009 (+) False XLOC_033924
TCONS_00066356 other upstream 315090 38349665 ~ 38364944 (+) False XLOC_033923
TCONS_00066429 other downstream 733408 39418562 ~ 39429027 (+) False XLOC_033945
TCONS_00066460 other downstream 1005878 39691032 ~ 39695827 (+) True XLOC_033949
TCONS_00066462 other downstream 1028061 39713215 ~ 39713623 (+) False XLOC_033951
TCONS_00066463 other downstream 1028335 39713489 ~ 39713774 (+) True XLOC_033951
TCONS_00066478 other downstream 1769558 40454712 ~ 40460332 (+) False XLOC_033959

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_10770581_10774331.mRNA True 1974 mRNA 0.45 11 CI01000026 10769891 ~ 10774331 (+)