RNA id: TU30080


Basic Information

Item Value
RNA id TU30080
length 3537
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G22105
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 36822983 ~ 36826519 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAATCTTTTGCTCTTTCTCCCGAGACTCTTCTGATGGATCATGGTCATCCTCTTCCTGCTCTCCCACAATGCCTTTATCAGTCTCTTCCAGTGCCATTCCATTCATAAACTCACCCTCCAGAGTGGCAACTGTAGCGCCTGAAACGTCTGTGCAGCCAGAGAGCTCCAGGTTGGCAACAGTAGGGTCGTCTGTCCGCTCTTTACCCTCATTAGTCTCGGTCACCTCTTCTTCCTccagctctcctccctcctctccctcactAGCGTGTTTCAGGTCCTGGCTGCTGTCAGCTGATTTGAGACTAGCTCTATCCCGCATTGAGTCTCCATCACCCAGTGAGAGCTCACTTGTGCTGCTTTTGTCACTTAGTTTCCCCACACTTAGAGATTCCTGGTCTTGATCCTTGGCTGCAGAGTTCTGGCTCTGCGGTTTCCCAGCAGCCACCCCTGCTCCACTGTTGACATAGAACTCATTCTGAAAGTCCTCTGCCTCTGAGAGAAAAACCTGGTCATTGAGACTGATGCCAGAGGAGTAGTCGACCATACCCGACTCCCCCACCACGCCGACTCCTCCACTTGCACCACCGCCACTTCCCATTTTCCCGCTAACAGATGCAGAAGATTGCTGCACCTCGCCACATTGAtagtcttcttcctcttctagaTTACATGTGCCACTCCTCAACCCTTTGCCAGCTTCCCCGCCCGAGCCTGAGATGCAGCTTTCAAAGCCAGTGATGACCTGCAGCACATGGGGGAGTAGGCTGGACAGAAAGGCCTGCAGGCCGAGCCTCACAATCAGCTGCAGAATGAAACAGTCAGTGTAGAGATAGAAACGTCCCCTTAGGCAGTGAGGGTTTTCATAAACATTGATCAGCGGCTTCAGTAGGtacttgtttgcatttctgGGACCCAGTACTCTAGAGATGGGCTCGAAAAGGTACCAAGTAGCATAGACAGCAGTGGACTCCTCAAGCATGAGGGCTAGAATGAAGGGCAAGAGAATTTCAAGACCCTCAGCTGTGATGTTACCCCGCAACAGTGTCTCAAGCTGCTGCCACAAGTTAAAGACAACATCTCTTCCTTGAAGACTACATGTGGTCTCCATCTTGGCATGGTAGGAAAAGATAAAATTATGAAGTGCTGCAAAATAGGAAGGGAAAGGAAAGGGGGTGATGATTGAGTTCAATAATTGGCAGGGGTTTGGGGGAGGGAGACCATCGCAGATGGGTTCATATTTGAAAAGAAGTGGATGTGGGCAATCTGGTACTTCTTTCTGTGCTATTCCAGAGTGCTTCTCTATTAGAAGCAGTATCTCAAGAGCATGATGCAAAGACAGTGGCACATCACGGAGGCTGGCAGAACATAGCTTCATTACAGCTTGGAAACGCTGTCTCAGGGGGGTGCCTGGTTTCAGTCCTCTCAGTTTAGAGGAGTGGAATATCTCAGCGATGAGAACACCAAGGGCCTGCATGTCTCTTTGGTAGAGCTGTGTAAGAGAGGGTAGAGATTCAATTATGACACCATCCTTCATGCAGTCAGTAGATCCTGCAGGATGCCATACTTCAGCGTGCAGACTCTTTACCAGGAAGTTATTCAACTTCTCCAGCTCTTCCAACGGCTGCAATGGGTTGAAGCCTTCAGGGAGGACGATCTTGATATCCTCTGCATTTGTGGCAGTAACACTAACCTCCCCATGTTTTTTGTTCGTTGACCCACCTCTTTGTAACATGGCACTGCGTAAACCAGGGCCTAAGCCGCTTGTGAAGTCACCAGGGAATGAACTCGGGGACTGAGATACATTAAGTGCTGTGTGCTCTCCTCCCATCTTTCCTCCAGCCGTACTGATGCTTGGCATTGGCACAGAGCAGGGCGCAGAACTGGTTGAGCCAGCAGATGCTAATGAGTCCAGAGCTTCCATACCTTGTTCAAGCTCTTCATCTCTGTCTACCATGGTCCAGCCACTGGACTCACACCCTGTAGACTCTGGCACCATTTCATCCACAGTGTCAGCCCCACTGTCAATTTGAGGGATGTGTAGAGAAGGCACATTAAGAGCAGCAAGGCCAAGGAGAGGAGGTTCTGCTGGGGCGTACTGGGAAGGAGATAAGCGTTGTGGGTGGGGCTGGTCAAAGAGCTGAACTACACCATAGGTAGTAAGATTGGTGTGGTTGTCCACCAGGTGGAGGCACACGTTCTTGGCCTTGACAGCTTCTTTACCAGACAGCTTATAGCCAAATGTGAGATCTATCCAGTGATGCAAGTGCTGGGACACTTCTCTGCTCTCCAGAAGGCGTCGATGGACCTCAATAAATTCCTCACACGACTTGCACCAGGAAGGCACATCCAGGTCTGGCATGTCGGGGTGGATGGAGCGGAAAATGGAGGGATCTGTGTAGAACTCTGGAATGCACTCATCAGGGGTCCAGCTCTGCATGCGCTCCATACTGGCTGGGTATTCGTTCGGCTCCCACTGGGATCTAACATGGCTGCACAACACTGACTTGGGTGTCTGTCGAGCTTTGTAGACATAGTAGGTAATGTCTGAGAGCACATCAGATATGTGGTGAGGTACATGGAGATGGTCAGACTGTCCAGCACCGCCGGCACCTACAGAGCCACCAAGGTCTCCACCTACACCGCTACCACCAACCCCATTACCGACTGCAGCAGCCAAAGCCTCTTTGGTCATCTCATATGTGAAGTCCAGCTGCTTATCCCCTTTGTTCAGCCTGAACTTTGACCTCCTGAGGTCTCGGAATTTTCCAAATGGCACAGTAAAATCAACCACCCAAGGCAGCACTGGGTGATAATTAGGGTCTCCTTCTCGCCGTCCTGCTAACCTGTTGAGTTCCATCACGTAGCGGAAGTTACTGACTCGTCCATGGACCCAGTCCAGAACCAACTTCTTAAGCTCATCAAAGCAGTCTTTGCAAAGTATTTTGTTCTCTTGGCTCACACATGAATTGTTCCTTGGCAGGACATGTTTCGGCACTTGTCTGCCTGTAACGTCGCTGTTTGCATCCCATTCCGTCCCCAGTTCCTCATAATGGGCTAGGTTGAGCTTGAGGCGGCTGCAGAGCTGCTCATCTACAGCTACGTCCTGCAGGGAGAGCTCTCCACAAGACAGACCTGCTGCATGACATCCCTGCAGAGCTATCAGTAACTGGTAGAGAATGAACAAAACTTTGGCATGGCTGTTAGCAAGCTTGGCTGGGCTGAAGGAGACAATATCATGGAGTGAATACTGAGTATAAGGTAGAATCACGTAGAGCATTTCTGCTGTCTCCAGCAGACATTCTGCAGGCAGAACATTAGGACACAGATGGTCTGACTGGGACGTGGAAGAGCAAGATGAACTGGTTGGCAAGTAgttttctttctccttctctctggcCGGAGAAAGGGATGGTGACACTCTGTCAGATGAGATGAAGGTGGAATTGAAGAGCTTCTGTAAAGCATTACGCACTGCATCTACAGCTGCAACATGCATCTGCTCATTGGCTCCGGCATATGCCTGCACAAGTTTGTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30078 lncRNA upstream 1470 36821175 ~ 36821513 (+) True G22103
TU30077 lncRNA upstream 1938 36820230 ~ 36821045 (+) True G22102
TU30076 lncRNA upstream 3119 36819406 ~ 36819864 (+) True G22101
TU30075 lncRNA upstream 4286 36816979 ~ 36818697 (+) True G22100
TU30051 lncRNA upstream 74320 36748393 ~ 36748663 (+) True G22080
TU30082 lncRNA downstream 2625 36829144 ~ 36829479 (+) True G22107
TU30109 lncRNA downstream 123228 36949747 ~ 36988100 (+) True G22129
TU30198 lncRNA downstream 429612 37256131 ~ 37256934 (+) True G22201
TU30201 lncRNA downstream 453111 37279630 ~ 37279982 (+) True G22203
TU30202 lncRNA downstream 456327 37282846 ~ 37283279 (+) True G22204
XM_039824455.1 mRNA upstream 115833 36551424 ~ 36707150 (+) True rtn4rl1b
XM_039824198.1 mRNA upstream 458840 36351096 ~ 36364143 (+) True hic1
XM_039782523.1 mRNA downstream 61380 36887899 ~ 36898206 (+) True slc13a5b
XM_039782559.1 mRNA downstream 76322 36902841 ~ 36909662 (+) True slc47a3
XM_039818867.1 mRNA downstream 309573 37136092 ~ 37138177 (+) True txndc17
XM_039791039.1 mRNA downstream 312470 37138989 ~ 37200571 (+) True nxn
XM_039791048.1 mRNA downstream 379630 37206149 ~ 37211192 (+) True glod4
TU30074 other upstream 7345 36813848 ~ 36815638 (+) True G22099
unassigned_transcript_103 other upstream 1776263 35046649 ~ 35046720 (+) True trnap-agg_1
XR_005637456.1 other upstream 3721295 33041400 ~ 33101688 (+) False stx1a
TU28939 other upstream 3925420 32896624 ~ 32897563 (+) True G21267
unassigned_transcript_102 other upstream 4379930 32442967 ~ 32443053 (+) True trnastop-uca
TU30081 other downstream 1391 36827910 ~ 36828411 (+) True G22106
TU30179 other downstream 437532 37264051 ~ 37269296 (+) False dynll2a
TU30279 other downstream 614353 37440872 ~ 37443828 (+) True G22263
TU30800 other downstream 2396207 39222726 ~ 39224106 (+) False brca2
TU30884 other downstream 2856126 39682645 ~ 39686026 (+) True G22731

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018207 True 6198 mRNA 0.47 11 NC_007126.7 26554729 ~ 26568278 (-)
grasscarp (Ctenopharyngodon idella) CI01000072_01391395_01404483.mRNA True 9528 mRNA 0.43 10 CI01000072 1389526 ~ 1406073 (+)