RNA id: TU200084


Basic Information

Item Value
RNA id TU200084
length 336
lncRNA type intronic
GC content 0.48
exon number 2
gene id G148028
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 32323433 ~ 32323850 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAAAATATGCagtaagggcgttttcacacatgaaagtctgAACCCAGGTCTGGACCaaagttcatgtttttgttacattgtatacatttgatccggtaagttttggtttggctctcccctactgactgctactctctcctctactgactgctgctctctcctactgactgctactctctcctctactgactgctactctctcctactgactgctactctctcctactgactgctgctctctcctactgactgctgctctctcctactgactgctactctctcctctactgactgctactctctcctactgactgctactctctcctactgactgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641541.1 lncRNA upstream 115797 32206622 ~ 32207636 (+) True LOC120572971
XR_005641558.1 lncRNA upstream 118295 32203304 ~ 32205138 (+) True LOC120572985
XR_005641610.1 lncRNA upstream 127531 32194616 ~ 32195902 (+) True LOC120573036
TU200074 lncRNA upstream 128024 32194112 ~ 32195409 (+) False LOC120573036
TU200073 lncRNA upstream 168725 32153770 ~ 32154708 (+) True G148020
TU200088 lncRNA downstream 13259 32337109 ~ 32339975 (+) True G148030
TU200086 lncRNA downstream 13447 32337297 ~ 32340296 (+) True G148029
TU200089 lncRNA downstream 14218 32338068 ~ 32341878 (+) True G148031
TU200052 lncRNA downstream 22159 32346009 ~ 32357834 (+) True G148007
XR_005641540.1 lncRNA downstream 35011 32358861 ~ 32362237 (+) False LOC120572970
XM_039822181.1 mRNA upstream 267997 32050783 ~ 32055436 (+) False LOC120572761
XM_039822182.1 mRNA upstream 267997 32050823 ~ 32055436 (+) True LOC120572761
XM_039822183.1 mRNA upstream 268128 32050783 ~ 32055305 (+) False LOC120572761
XM_039822298.1 mRNA upstream 276993 31998261 ~ 32046440 (+) False LOC120572827
XM_039822386.1 mRNA downstream 73017 32396867 ~ 32401325 (+) True LOC120572878
XM_039822437.1 mRNA downstream 104014 32427864 ~ 32430614 (+) True LOC120572918
XM_039822435.1 mRNA downstream 131623 32455473 ~ 32457688 (+) True LOC120572915
XM_039822449.1 mRNA downstream 166629 32490479 ~ 32493796 (+) True LOC120572925
XM_039822423.1 mRNA downstream 225073 32548923 ~ 32551865 (+) True LOC120572905
TU200015 other upstream 486560 31702869 ~ 31836873 (+) True G147982
XR_005641511.1 other upstream 835446 31479201 ~ 31487987 (+) False LOC120572933
XR_005641512.1 other upstream 835446 31480688 ~ 31487987 (+) False LOC120572933
XR_005641513.1 other upstream 835446 31480688 ~ 31487987 (+) False LOC120572933
XR_005641514.1 other upstream 842953 31479193 ~ 31480480 (+) False LOC120572933
TU200151 other downstream 299044 32622894 ~ 32698317 (+) False G148079
TU199900 other downstream 379898 32703748 ~ 32720876 (+) True LOC120572879
TU199912 other downstream 624564 32948414 ~ 32951917 (+) False LOC120572610
TU200253 other downstream 915249 33239099 ~ 33285193 (+) False G148151
TU200990 other downstream 1404521 33728371 ~ 33864241 (+) False LOC120573051

Expression Profile