RNA id: XR_005641541.1


Basic Information

Item Value
RNA id XR_005641541.1
length 667
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC120572971
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 32206622 ~ 32207636 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCTGAATTTGTAATTTACTGTTAGCTCTGACATGGGATTTCAATATGACTCAGTAGTTTTTACTATATTGTTTAATCCAAGGGATGTCTAAGAACATCGACAAACTTGCCAAGGAAAAGGATTGGCAGGTGGTAAAAAGTGGCAACAGAGTATTAGGAACCATCTCTACTGGACTGCATCATCATCCAAGACAGGCCCAGAGAAGGTGGCAAAGTGGACATCTGTCATCAATCACAtccacaacatacacacacatgaagaCCCCCTTTTTCCAAAGTGTGAGCACAGTGATGTCATAGATAAGAGGAGGTGGTTGAAGCCAGGATCAAAGGCTTCCTACAGACTGGAGAAGGTCCTTACAAACAAGAGGTTCATCAAGGGTGTGGAGAAGCTAAGCCCTCACCACCAAACATCCTCTCTTGAGGCCTTCCACAGCGTTGTCATCCGCTTTGCACCAAAGAGTGTGGTGTACCCATTCATTGGGATGCTTTGCAGactCTATCTCTCAGCATTCCACTTCAATGAGAATGCCAACCGGCCACAGTCAACAAGTGCTCTGGGAGATCCTGCCTTTAAACTGGCCTTCCCTAAAGCCAAGAAAGGGGGATACAGCCTCAAACGACGGAAAACTGAGCCGACATTCTGTAAGTAAATTATCACAACAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641558.1 lncRNA upstream 1484 32203304 ~ 32205138 (+) True LOC120572985
XR_005641610.1 lncRNA upstream 10720 32194616 ~ 32195902 (+) True LOC120573036
TU200074 lncRNA upstream 11213 32194112 ~ 32195409 (+) False LOC120573036
TU200073 lncRNA upstream 51914 32153770 ~ 32154708 (+) True G148020
XR_005641615.1 lncRNA upstream 54985 32150853 ~ 32151637 (+) True LOC120573042
TU200083 lncRNA downstream 115797 32323433 ~ 32323850 (+) False G148028
TU200084 lncRNA downstream 115797 32323433 ~ 32323850 (+) True G148028
TU200085 lncRNA downstream 115797 32323433 ~ 32323850 (+) False G148028
TU200088 lncRNA downstream 129473 32337109 ~ 32339975 (+) True G148030
TU200086 lncRNA downstream 129661 32337297 ~ 32340296 (+) True G148029
XM_039822181.1 mRNA upstream 151186 32050783 ~ 32055436 (+) False LOC120572761
XM_039822182.1 mRNA upstream 151186 32050823 ~ 32055436 (+) True LOC120572761
XM_039822183.1 mRNA upstream 151317 32050783 ~ 32055305 (+) False LOC120572761
XM_039822298.1 mRNA upstream 160182 31998261 ~ 32046440 (+) False LOC120572827
XM_039822149.1 mRNA downstream 39833 32247469 ~ 32344225 (+) True LOC120572744
XM_039822150.1 mRNA downstream 39833 32247469 ~ 32344225 (+) False LOC120572744
XM_039822151.1 mRNA downstream 39833 32247469 ~ 32344225 (+) False LOC120572744
XM_039822154.1 mRNA downstream 39833 32247469 ~ 32344225 (+) False LOC120572744
XM_039822152.1 mRNA downstream 39833 32247469 ~ 32344225 (+) False LOC120572744
TU200015 other upstream 369749 31702869 ~ 31836873 (+) True G147982
XR_005641511.1 other upstream 718635 31479201 ~ 31487987 (+) False LOC120572933
XR_005641512.1 other upstream 718635 31480688 ~ 31487987 (+) False LOC120572933
XR_005641513.1 other upstream 718635 31480688 ~ 31487987 (+) False LOC120572933
XR_005641514.1 other upstream 726142 31479193 ~ 31480480 (+) False LOC120572933
TU200151 other downstream 415258 32622894 ~ 32698317 (+) False G148079
TU199900 other downstream 496112 32703748 ~ 32720876 (+) True LOC120572879
TU199912 other downstream 740778 32948414 ~ 32951917 (+) False LOC120572610
TU200253 other downstream 1031463 33239099 ~ 33285193 (+) False G148151
TU200990 other downstream 1520735 33728371 ~ 33864241 (+) False LOC120573051

Expression Profile