RNA id: XM_039822409.1



Basic Information


Item Value
RNA id XM_039822409.1
length 1275
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC120572895
representative True

Chromosome Information


Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 33198196 ~ 33204677 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AAGTACACCGTTATTATGATGTGTATGTTATGATGCACTTTATCTCCTGCTTTCCTTTCTCTGCGGCTTCAAATCTAAACGGAAACTAACCTGCTGCTGCGTGTTTACTGTGCGCTGCCACTTCTCTGTCCCCCCCGGGGCTTTTAACaccaaactgctgctgaaaaccaAAAGGCTGCAGCACCTGAAtgagtctgtgagtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttaaacatGGGGAGGTATTTCCAGAGTGAGGTCGACATTAATAGTCCGTGGTATCAGGTTCTGGCCGCCTTCTGGCAGCGCTACCCGAACCCatacagcaccCATGTGCTCACCGAGGACGTCCTGTACCGCGAGGTCACCCCTAGCAACCGCCTGTTGTCGCGGCGCCTGCTGACCAAAACCAACCGGTTGCCGGGCTGGGCGGAGCGCGTGTTCCCGGCTCACATGGCTCGCCGCGTCTACGTGCTGGAGGACTCGGTGGTCGAccccgagacacacacactcaccacgcGCACCTGGAACATCAACCACAACAAGCTGatgacgGTGGTCGAGGGCTGTTTGTTTGAGGAAGACTGCAGTCGGCCATCTTGGACCAAACTGAGGAGGGAGGCCTGGATCATCTCCACGGTCCGCGGCCTGGCCCGGCCcatacagGAGTTCGGGCTCGCCAGGTTCAGGAGTAACCAGGACAAAGCTGTGAAGGGTCTGGAGCACGCTCTGAACAAGATACAGACTGAGGACCCTCCTCATCTCCATGGCGACCAGGGCGAGTCGTCAGAGAAGCagaagcccctccccccacaggCCCCGCCCACTTCTACCCAGAAGCCCAAGCAGTTCGTCTGACCTCTGCAGCAGCACTTCTCAAACTGTTTTCACTTTAATATatgttaatatttgaatattttttaagTGACGTACCCTGTgaacagggttagggttaacaaCAGCGCAAAATATTTTgggtaaaaaatactaaaaagtcTCTATAAGAGGACCAGTACAGTGCTGGGAGTAACTGagaaatatttaaatgctacattaattttaaatgttaagAATTAATTCATTgttataatttaattattttaggatTTATgttgtgtacatatatatatgtgtgtgtatatattatgaCGTATTTAACATTTGGCAAAAATctcatgtaccccctgcagtacttcaaattacacacacacacacacgtatatgtatgtacacacacgcacagacacactcac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU200880 lncRNA downstream 619 33177386 ~ 33197577 (-) True G148563
XR_005641607.1 lncRNA downstream 22692 33159293 ~ 33175504 (-) True LOC120573033
TU200533 lncRNA downstream 65694 33132272 ~ 33132502 (-) False LOC120572612
TU200853 lncRNA downstream 79946 33117967 ~ 33118250 (-) False LOC120572612
TU200842 lncRNA downstream 222013 32973356 ~ 32976183 (-) True G148543
TU200859 lncRNA upstream 18718 33221735 ~ 33283874 (-) False corin
TU200866 lncRNA upstream 18718 33221735 ~ 33341537 (-) False corin
TU200858 lncRNA upstream 34753 33237770 ~ 33283874 (-) False corin
TU200889 lncRNA upstream 66389 33269406 ~ 33270814 (-) True G148571
TU200890 lncRNA upstream 67937 33270954 ~ 33271812 (-) True G148572
XM_039822434.1 mRNA downstream 6110 33186655 ~ 33192086 (-) True LOC120572914
XM_039822450.1 mRNA downstream 38912 33158690 ~ 33159284 (-) True LOC120572926
XM_039821933.1 mRNA downstream 65521 33110199 ~ 33132675 (-) True LOC120572612
XM_039822201.1 mRNA downstream 107539 33084338 ~ 33090657 (-) True LOC120572772
XM_039822223.1 mRNA downstream 125061 33063196 ~ 33073135 (-) True LOC120572785
XM_039822432.1 mRNA upstream 68909 33271926 ~ 33272485 (-) True LOC120572913
XM_039821935.1 mRNA upstream 79624 33282641 ~ 33316681 (-) False corin
XM_039822329.1 mRNA upstream 292696 33495713 ~ 33498046 (-) True LOC120572843
XM_039822342.1 mRNA upstream 296983 33500000 ~ 33502560 (-) True LOC120572848
XM_039822290.1 mRNA upstream 303821 33506838 ~ 33509846 (-) True LOC120572824
TU200787 other downstream 240277 32953770 ~ 32957919 (-) False G148509
TU200833 other downstream 252390 32945345 ~ 32945806 (-) True G148536
TU200744 other downstream 442835 32731080 ~ 32755361 (-) True G148472
TU200707 other downstream 497791 32698321 ~ 32700405 (-) True G148453
TU200650 other downstream 822647 32373078 ~ 32375549 (-) False LOC120572607
TU200865 other upstream 34753 33237770 ~ 33312272 (-) False corin
TU200861 other upstream 70114 33273131 ~ 33283874 (-) False corin
TU200862 other upstream 70114 33273131 ~ 33283874 (-) False corin
TU200864 other upstream 70114 33273131 ~ 33283874 (-) False corin
TU200860 other upstream 76758 33279775 ~ 33283874 (-) True corin

Expression Profile