RNA id: XM_039822434.1


Basic Information

Item Value
RNA id XM_039822434.1
length 1499
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC120572914
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 33186655 ~ 33192086 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTACTCCCTTTTCTCAAGTTTCTTGAGTAGCTGCTAGAtcagattttttcttttctctgtaacCTAAAGGAGATAACGGTGGATCAACGCTCCCTCAGCTTTAATGGCTCCATTTCTGTTCCTGTTGTTATTTCTCTCTGGAGCAGCTTCTGACCTGATTGTGGTAACAGTGCCTGGAGATGATGTCATTCTACCATGTCAGGCTGATGATTCCTCCATCAGAGCTGTAGAGTGGAGCAGACCTGACCTGGAGCCAGATACCGTCCTCTTATACAGAGATGGACAATTGGATCCAACCCTCCAGCATCCATCCTTTAAGGACAGGGTggagctggtggacagagatCTGAAGGACGGAGACGTGTCTTTAACTCTGAAGAATGTGAGCAGACACGACGCTGGGGAATACGAGTGTGGAGTTGAAACCGATGACCACATCACAACCATGAGAACCATCAGAATCAACAGAACCGTCAAAATAATCAGAACCATCTATCTGCAGGTTACAGAGCCAGCAGgttctgAGGATGGAAACTCCTCTCCTGTAGGCCGATACGTTGGACTGGCAGCAGGTGTTCTGCTTCTTGTAGCTGCTGCAGTGGTTGGTGTCCTGAAATATAAAAGACACAAGGACAAGAGATCAGGACCACCTGCTGTTGATGTTGAGGCAGGACACTGAGTAGGTCCTCTAAAAACTGAGGAGACTGAATTTCCGTTTCGTCTGTACCTCAGTTCAGCTACATGGTGTCACGGACTAGCGCAAAAGTCTGGAGTTGACGGAAGTATGTCAAAGCCTCGGCTGTGAACGGTTTCATCTCCTACAAGTTCTTCTCAATAAAAGTCCTCAGTTATTTtggtattttaatgtttttattatgaagcagcaaaatccgGAAATGTTGGGGATTCATTAGCAGTAACATAACACGACTCCTATAAGCTTTGTGTATTTTTACTTAacaacagcattctttgacaaaagCTGTCCAATCCATTAcaaggaatgttttacaatccACCTGCCACTATGGCTGGTGTACAAGGCAAAGTCACCCCCCACTGGgtgctaatttcccaccctggtgTGATGTATGTTCTTCATGTTATGTCTGTCGGTGTCTGATGTAGGGACTATCTGTTTGTATCAGATCAAAATGTCCTGTCATGAAGTGCCTTGTGACTGTGCTACAAACCAAACAGTAAGACATAACAgttatctactactactacaactactatcaCTGTATTGTACTGCATGTCTTTGGACTTGAGTTactgtaaatggactgcatttctATAGTGCTTTTTTAGTCTTAATGACTACTCATAGAGCCTAAAACACTATTCACACACTGATGTCTTGCCTGAGGACAGTTGGACATGTAGCCTACAGGGCCCTCTGACCTTCCAGGTGGTAGATGACCACTCTACCACCTGGGCTGCCCCCGAGCTCTTTGCTATgccaacttgacattaaccaagacaacataaataaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641607.1 lncRNA downstream 11151 33159293 ~ 33175504 (-) True LOC120573033
TU200533 lncRNA downstream 54153 33132272 ~ 33132502 (-) False LOC120572612
TU200853 lncRNA downstream 68405 33117967 ~ 33118250 (-) False LOC120572612
TU200842 lncRNA downstream 210472 32973356 ~ 32976183 (-) True G148543
TU200786 lncRNA downstream 228736 32953770 ~ 32957919 (-) False G148509
TU200856 lncRNA upstream 5708 33197794 ~ 33294488 (-) True G148555
TU200859 lncRNA upstream 29649 33221735 ~ 33283874 (-) False corin
TU200866 lncRNA upstream 29649 33221735 ~ 33341537 (-) False corin
TU200858 lncRNA upstream 45684 33237770 ~ 33283874 (-) False corin
TU200889 lncRNA upstream 77320 33269406 ~ 33270814 (-) True G148571
XM_039822450.1 mRNA downstream 27371 33158690 ~ 33159284 (-) True LOC120572926
XM_039821933.1 mRNA downstream 53980 33110199 ~ 33132675 (-) True LOC120572612
XM_039822201.1 mRNA downstream 95998 33084338 ~ 33090657 (-) True LOC120572772
XM_039822223.1 mRNA downstream 113520 33063196 ~ 33073135 (-) True LOC120572785
XM_039822448.1 mRNA downstream 131155 33049359 ~ 33055500 (-) True LOC120572924
XM_039822410.1 mRNA upstream 6110 33198196 ~ 33204677 (-) False LOC120572895
XM_039822409.1 mRNA upstream 6110 33198196 ~ 33203017 (-) True LOC120572895
XM_039822411.1 mRNA upstream 6519 33198605 ~ 33203017 (-) False LOC120572895
XM_039822432.1 mRNA upstream 79840 33271926 ~ 33272485 (-) True LOC120572913
XM_039821935.1 mRNA upstream 90555 33282641 ~ 33316681 (-) False corin
TU200787 other downstream 228736 32953770 ~ 32957919 (-) False G148509
TU200833 other downstream 240849 32945345 ~ 32945806 (-) True G148536
TU200744 other downstream 431294 32731080 ~ 32755361 (-) True G148472
TU200707 other downstream 486250 32698321 ~ 32700405 (-) True G148453
TU200650 other downstream 811106 32373078 ~ 32375549 (-) False LOC120572607
unassigned_transcript_715 other upstream 10015 33202101 ~ 33202172 (-) True trnag-ucc_11
TU200865 other upstream 45684 33237770 ~ 33312272 (-) False corin
TU200861 other upstream 81045 33273131 ~ 33283874 (-) False corin
TU200862 other upstream 81045 33273131 ~ 33283874 (-) False corin
TU200864 other upstream 81045 33273131 ~ 33283874 (-) False corin

Expression Profile