RNA id: TU200860


Basic Information

Item Value
RNA id TU200860
length 2946
RNA type TUCP
GC content 0.43
exon number 4
gene id corin
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 33221735 ~ 33341537 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGTGTCAGTTTAGCCGACATGAAGACTATAACTCCCAGAATGCTTTGCGCCGGCTACGACGCTGGAACCGTTGACTCCTGCATGggtgacAGCGGGGGCCCGTTGGTGTGTGAGCAGGACGGGGGCCACTGGACTCTGTTCGGCCTGACCTCGTGGGGTAGTGTGTGCTTCAGCAAGGTGCTCGGGCCCGGAGTGTACAGCAACGTTACACACTTCACCCCCTGGATCCAGCAACAGATCTACATACACACGTACCTGAgggactgacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacaaagacagagacagagacacacacacacacacagaaacagagacacacacacacagacagagacacacacacacacacacacacacacacacacacacacatacacacacacacacacagacagagacacaaatacacacacaaacacacacacacacacacacacagagacagagacacacacaggacacacacacacacgcacaatacacacacacacagacagatacacacagacagagacacacacacacagacacacacacacagacacacacacacacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagtcacacagctTCAGTTCCTCTACTGGTGCCTATATCTATCCTGATAGCCTTCAGATGCTAACTGTTGTATTAGCAGGAGAATTAACTACTATTACAGATGCTAACTAGTTAGCTAGTAGAGCTGCAAGCAGACTTCACATTCATTAAACATTCACTTTAAGGGTCATTTTTAACCTTTCTCAACACTATTTCCCAAtgttgtgtctaagtgactgatgggaacacgAAAAATCACCATCCACCACCaagaaatcaccatcaccaaactccaccagactccatgtaaataatcaggacttttagcgtatatagagccagcacatttccacatgtaaatgggtgaattaagtttttttttcaaccaaaccagagtggtgattgttggaaacagtggaaagatgaaccaagacggcttttggtagttttatttagtttctgtccactttgaattaagtgtgtttttaagtttataaaagtagtgattatttacatggagtctggtggagtttggtgttaaacaaaaaggacttCACACAAAGGTTTCATTCTTAGATTATTAGATCATTGTCACATTAATACAAAGTGAACTGAgattattggtgtgtgtgtgtgtgtgtgtgtgtgggatgtaaacacacactttatttccACGGCATCGTCTGCTTCGAGTGTTCATACTTTTAATtatcatgtttaaaaaaaaaaaaatcacaacgtTCAGACGTTCAAGCGCTGAATCTGTAAAAGCTGCTAAAATCTAAAGAGCACTCAACTTCCCACAATGCTTCACTCTATAGTGCCTGTACTTAAACTTAGCCGTGTTAACCTGTAACCATGTCGTACTgtacgtgtgcgtgtgtgtgtacgtgtgcgtgtgtacgtgtgtgtgtgtacatgtgtgtgtgtacatgtgcgtgtgtacatgtgcgtgtgtgtgtgtgtgtgtgtgagagagagactatTACTTTGCTTCTAAACACTCCGGCAACTTATTCGGGCAACTTTGAGGAACAACATTTATCTTAAAGTCCAGTTTCGGACCAAAAGATTGGAGACGAGAATTTGTACAAATTCTCGTCTCCATGGAAACAACTCTCGTCTTAAAATTTGAATGAGGATCTTGATGGAGAGATACGTGCTGCAGCGTCAACTTTTAAATTTTCTGGCTCAAAATATATCTAGTTTTTTTCGTCTTTTTCGCCACTTGTGTCACTTTTCctccaaagttttttttttttacgtttttttgtcacttcttaatgatattttttgggggtttttttcccccacgtttttgaagctaTTTCCTACATTTTTGCCACTCGTTTCAAagttattttatcttttttatttcctcCAAATCCTATATAATTGTAGCCTGacgagccagacccacatccagatgttgagggtctgggaactccccattggtcagggctcaatccgaggggggCGGGatcaacggttgtctttcaaattcccctctgcacgcaataggctGGCGctgcaaccaatcagagcaacgaagaaggtagcggcgctagttgatagattaaactgttGACGTATCCGGTCATCAAacctccgaacacatcttcccttttttaagaatgactccagtgtcgttctttgttcttttctcaaagtaaagctgaactccaaggcttccagaagaccactgttcaccagcagcagcagcagcagccataagccccgcccccaggctctatacacgatgtgattggcctgaccagagtttgggtttttccagctcgcaagccaacggagagtgcctagactgaccctggctgcaaattacatttgctgccactagggtgcgtctagatttctaggctaacaaaaacattgaaaaagcttaaaaagCGTTGACGAAAAAtagctgaaaataaaaaaaaacttgaaaaagtgacaaaaacatcaaagaaaAGACCCAAAAAAatggtggaaaaaaaacattgaagaccgtCAACTGAAGGATAACTTCACttcatgatttataaaaccatgccaacaattattagccAATTTAAAAACTTAGCATGCAATTAAAGCTACGTCCAGAACGCCCACACGTTATCGTAGGCCAAGTTTAATATGCTACTTCATTTacacataatatacagtacagaggccaaaagtttggacacaccttctcattcagtgtgtttctttattttcatgactatttacattgtagattctcactga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200867 lncRNA downstream 370 33277761 ~ 33279405 (-) True G148557
TU200890 lncRNA downstream 7963 33270954 ~ 33271812 (-) True G148572
TU200889 lncRNA downstream 8961 33269406 ~ 33270814 (-) True G148571
TU200875 lncRNA downstream 18096 33175630 ~ 33261679 (-) True G148558
TU200880 lncRNA downstream 82198 33177386 ~ 33197577 (-) True G148563
TU200854 lncRNA upstream 943 33284817 ~ 33294488 (-) False G148555
TU200877 lncRNA upstream 18312 33302186 ~ 33304042 (-) True G148560
TU200876 lncRNA upstream 26343 33310217 ~ 33312620 (-) True G148559
TU200895 lncRNA upstream 58209 33342083 ~ 33347980 (-) True G148577
TU200897 lncRNA upstream 66715 33350589 ~ 33351873 (-) True G148578
XM_039822432.1 mRNA downstream 7290 33271926 ~ 33272485 (-) True LOC120572913
XM_039822410.1 mRNA downstream 75098 33198196 ~ 33204677 (-) False LOC120572895
XM_039822409.1 mRNA downstream 76758 33198196 ~ 33203017 (-) True LOC120572895
XM_039822411.1 mRNA downstream 76758 33198605 ~ 33203017 (-) False LOC120572895
XM_039822434.1 mRNA downstream 87689 33186655 ~ 33192086 (-) True LOC120572914
XM_039822329.1 mRNA upstream 211839 33495713 ~ 33498046 (-) True LOC120572843
XM_039822342.1 mRNA upstream 216126 33500000 ~ 33502560 (-) True LOC120572848
XM_039822290.1 mRNA upstream 222964 33506838 ~ 33509846 (-) True LOC120572824
XM_039822368.1 mRNA upstream 239237 33523111 ~ 33524779 (-) False LOC120572860
XM_039822367.1 mRNA upstream 239237 33523111 ~ 33524779 (-) True LOC120572860
unassigned_transcript_715 other downstream 77603 33202101 ~ 33202172 (-) True trnag-ucc_11
TU200787 other downstream 321856 32953770 ~ 32957919 (-) False G148509
TU200833 other downstream 333969 32945345 ~ 32945806 (-) True G148536
TU200744 other downstream 524414 32731080 ~ 32755361 (-) True G148472
TU200707 other downstream 579370 32698321 ~ 32700405 (-) True G148453
TU200929 other upstream 212760 33496634 ~ 33498016 (-) False LOC120572843
TU201330 other upstream 440791 33724665 ~ 33789375 (-) False G148879
TU201327 other upstream 504721 33788595 ~ 33789375 (-) False G148879
TU201333 other upstream 504721 33788595 ~ 33789375 (-) True G148879
TU201334 other upstream 504721 33788595 ~ 33789375 (-) False G148879

Expression Profile