RNA id: TU200877


Basic Information

Item Value
RNA id TU200877
length 673
lncRNA type intronic
GC content 0.45
exon number 3
gene id G148560
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 33302186 ~ 33304042 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agttagttagttagatagatagatagatagatagttagttagttagttagttagttagttagGTAGTTAGTTAGGTAGTTAGTTAGATAGTTAGGCAGTTAGTTAATTAAATAGGTAGTTAATTAGATAGTTaggtagttagttagttaattagATAGTTaattagatagataggtagTTAGATAGTTAGTTAATTAGATAGGTAGTTAGTTAGTCCCCTGGTCAGCTTGCATAAGGTGCCCAATGAGTTAGTAGTTATTTAGTCTGTGGGTCAGTTAATGAGCACCCGGTctacctgtctccctctgtcctcgTGTGTcgtctacctgtctctctctgtccttgtgtgttgtctacctgtctctctctgtccttgtGTAATGAGCACCcggtctacctgtctctctctgtcctcgtGTAATGAGCACCcggtctacctgtctctctctgtcctcgtGTAATGAGCACCCGGTctacctgtctccctctgtcctcgTGTAATGAGCACCCGGTctacctgtctccctctgtcctcgTGTATTGAGCACCCGGTctacctgtctccctctgtcctcgTGTAATGAGCACCCGGTctacctgtctccctctgtcctcgTGTAATGAGCACCCGGTctacctgtctccctctgtcctcgTGTATTGAGCACCCGgt

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200856 lncRNA downstream 7698 33197794 ~ 33294488 (-) True G148555
TU200854 lncRNA downstream 7698 33284817 ~ 33294488 (-) False G148555
TU200859 lncRNA downstream 18312 33221735 ~ 33283874 (-) False corin
TU200858 lncRNA downstream 18312 33237770 ~ 33283874 (-) False corin
TU200867 lncRNA downstream 22781 33277761 ~ 33279405 (-) True G148557
TU200876 lncRNA upstream 6175 33310217 ~ 33312620 (-) True G148559
TU200895 lncRNA upstream 38041 33342083 ~ 33347980 (-) True G148577
TU200897 lncRNA upstream 46547 33350589 ~ 33351873 (-) True G148578
TU200904 lncRNA upstream 100323 33404365 ~ 33404745 (-) True G148585
TU200910 lncRNA upstream 161510 33465552 ~ 33466272 (-) True G148591
XM_039822432.1 mRNA downstream 29701 33271926 ~ 33272485 (-) True LOC120572913
XM_039822410.1 mRNA downstream 97509 33198196 ~ 33204677 (-) False LOC120572895
XM_039822409.1 mRNA downstream 99169 33198196 ~ 33203017 (-) True LOC120572895
XM_039822411.1 mRNA downstream 99169 33198605 ~ 33203017 (-) False LOC120572895
XM_039822434.1 mRNA downstream 110100 33186655 ~ 33192086 (-) True LOC120572914
XM_039822329.1 mRNA upstream 191671 33495713 ~ 33498046 (-) True LOC120572843
XM_039822342.1 mRNA upstream 195958 33500000 ~ 33502560 (-) True LOC120572848
XM_039822290.1 mRNA upstream 202796 33506838 ~ 33509846 (-) True LOC120572824
XM_039822368.1 mRNA upstream 219069 33523111 ~ 33524779 (-) False LOC120572860
XM_039822367.1 mRNA upstream 219069 33523111 ~ 33524779 (-) True LOC120572860
TU200861 other downstream 18312 33273131 ~ 33283874 (-) False corin
TU200862 other downstream 18312 33273131 ~ 33283874 (-) False corin
TU200864 other downstream 18312 33273131 ~ 33283874 (-) False corin
TU200860 other downstream 18312 33279775 ~ 33283874 (-) True corin
unassigned_transcript_715 other downstream 100014 33202101 ~ 33202172 (-) True trnag-ucc_11
TU200929 other upstream 192592 33496634 ~ 33498016 (-) False LOC120572843
TU201330 other upstream 420623 33724665 ~ 33789375 (-) False G148879
TU201327 other upstream 484553 33788595 ~ 33789375 (-) False G148879
TU201333 other upstream 484553 33788595 ~ 33789375 (-) True G148879
TU201334 other upstream 484553 33788595 ~ 33789375 (-) False G148879

Expression Profile