RNA id: TCONS_00069661


Basic Information

Item Value
RNA id TCONS_00069661
length 3378
RNA type mRNA
GC content 0.51
exon number 52
gene id XLOC_035516
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 14855471 ~ 14883692 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCCCTTCTGGAGTTTCAGGCAAACAAGGGAGGAAAGGGGAGCAAGGGAAACTCgGACCAAAAGGTTATGATGGAGAGAAAGGCAATAAAGGGGAGCTAGGTGAGTGGGGTGATCTTGGGGAGAAAGGACCTCAGGGAACCCAAGGAATGAAAGGAGAGAAGGGAAAGAAAGGAGAGAAGGGTCTGGCTGGGGTAATAGGATATAATAAAGGGGGTATTGGATTCACAGGATCACCAGGACCACCAGGACACACAGGGCCGAGAGGGCTGAAGGGAGTTCCAGGCGTCAGCGGACCTCCTGGACTTCTAGGCGAGATTGGGCCAAGGGGACCACCTGGCAAACCAGGAGAGGAAGGGCATGATGGTGTTACTGGTATTCTGGGTGCTCTTGGACCGCAGGGAAAACCAGGAGGTGATGGACCACCAGGTCAAAAAGGAGAGCGTGGAGATGTAGGAATTGAGGGAAGCATTGGAGGTCCAGGACCACCGGGTATAAAAggtGCCATTGGAAAACCAGGAAATCTTGGACCCTCAGGTGATCCAGGTTTAAAAGCACGTCGTGGAATGAAAGGAGAATCTGGCCAAAAGGGAGATCAAGGTGCTGCAGGTCTGCCAGGTAAACAAGGCTTCAGAGGTAGAGGAGGCCAGTCCGGGGTATTGGGAGAGACTGGTTCTAATGGACCTGCTGGTTTACCAGGACCCACGGGCAATGATGGATTTATTGGAGAGCCTGGCAGACAGGGACAAGATGGACCTAAGGGGGAAAGGGGTTCACCTGGTATCCAAGGTGTCCCTGGACCACGAGGTGATAAGGGTCGGATTGGCCAAGGAGGATTTTCAGGTTTTCCAGGTCCTTTGGGAGAAATGGGAGAATCAGGAGACCAAGGACCTGAAGGAGAGCCTGGTATTAAGGGTAGACCAGGAGTGCCTGGAGGGACTGGATCTAAAGGCCGAAAGGGTCTGCAGGGTGTTTCAGGCAGTCGAGGACCTGACGGCACTCAAGGTGCACATGGATCAACTGGACTATTGGGATCAAATGGAGACAGAGGACATCGAGGACCCCGGGGTTTACAGGGAAAGCCTGGCGCACCAGGAATTCAAGGTCCCATtggaaaaaaaGGGGAAACAGGGAGCCGAGGACTTACTGGCAAACCCGGAAAACCTGGAATCAGTGGTGTTAAAGGCAAAGAGGGTTCAGTAGGGCTTCATGGTAAACCCGGAGAAAAGGGCAAAATTGGCCCTGAGGGGCCAAAAGGAAAGCCTGGTCAGCCAGGGCTACAGGGAAACATAGGCCAGTGGGGTGAGACAGGTGTGCGGGGACTAGAAGGACATCAAGGGCCACCAGGCCTGCCCGGGCCCCATGGAGTAGCAGGGTATCCAggTAAAGATGGACCTCTTGGACCCATCGGGCCTGAAGGAGACAAAGGCAATAAAggACTGAGAGGAGACAGTGGATTGAAGGGAGTTGCTGGTATCGATGGTGAGGAGGGTGAAAAGGGTAAAGAAGGTTCTGTTGGTGATCATGGCCCAAAGGGAATCCAAGGAGAGAGTGGAAATCAAGGACTATCTGGAGTGAAAGGACCAAAAGGAAGAGATgGAATGAGCGGTGCTCCAGGGCAGAAGGGAGATCCTGGATCCTCTGGTGAAAAAGGTCATCCAGGTGTAAGAGGTCAATCCGGATTAGTAGGACAGTACGGTCCTGGTGGAAACATGGGAGAAGGTGGAGATAAAGGTGACAAAGGTCTACCTGGACTTGCTgGTGAGACAGGGACAACAGGGCCAATAGGTCCAAGTGGTGTTATAGGATTGCCAGGTTTGACTGGAAAAGAAGGATTTGGTGGACAAAGTGGAAAACATGGGCCAAAAGGAGAGCCTGGACTTAAAGGGAGTTCAGGGGGCCCTGGGAAGATCGGATCAGTTGGTGCAATAGGTCTAATTGGGAAGAAAGGAGAGCCTGGAAAACAAGGCAGAGTGGGCCATGTGGGTCAGCCAGGAGCTGTGGGTCCTCAAGGACCAAAGGGGAAACAAGGATCCTTAGGAGCTCCAGGGAAAAAAGGAGGAACAAGGGGATTTCCAGGAAGGAGAGGAAGTAAAGGTGTTGCAGGAAAGCCAGGACGCAGTGGAACAGATGGACTGCTGGGAGTTATAGGAACCGAAGGGGACCCAAATGACATCCTGGATGACAGATTTAGCACAGAAGGTGATATTGGATTCAGAGGACGTCCAGGGAGACCAGGTCTGCAAGGTAGTGCTGGAGCCACAGGAATACCAGGTTTGCAAGGGAGTCGAGGTCCTGCTGGACCAAAGGGCTCTATTGGACTGAAAGGGAAAACAGGGCCTTCTGGACCAATAGGACCAAAGGGTATTCCAGGACTTCAAGGTAAAAAGGGAGATGACGGACAGAAGGGAACAATGGGCCAAGTTGGTATAACAGGTTTGCAAGGGCCCATTGGACCACCAGGAGTAAAGGGAAATCAAGGTACTCCAGGCTACAAAGGGCGCCCTGGACCAAAAGGCATTAAGGGTGAATCTGGTGCTCGTGGGCGTCCTGGTGGAAAAGGACTTCCTGGTTCACCTGGAATAAAAGGAGTTCAGGGAAAATCTGGGCAAAAAGGTGTGAAAGGTCAAAGAGGACGACCTGGAAAACCAGGTATTGTCAGCCAGGTGAAACCAGGACCTCATACCCCCCCTCAGAGAAGAGGATCACAAAATAAAGCATTATCTAGAATGTTGCGATTTGATAACTTTGATGATTGGATTGAGGAAAACAGCCACTTACAAGGCACTAAAGACAACCCAGCATCCTCATGCAGAGAGCTGAGTCTCATCCAGCCTCACCTCAGAGACGGACACTACTATGTCGATCCTAACCACGGATGTCCTTTTGATGCTCTCCGAGTCTTCTGTAATTTTACTGCCGGTGGTCTAACTTGTGTGTCTCCTGTCCAATCTAATATTTCAGGAGTGTGGCCATCATCAGTGGACAGATCCAAAATGTGGTTTAGTGAGCTTCACAAAGGCTTCAAGTTGAAGTACAAAGATCTCGATGTTGTCCAACTGCGATTCCTTCGGTTACACAGCAACTCTGCCACACAAAGCATCAGCTTGAAGTGTCCCAAAAAACACAGTCCCACTGTTAATCATTGGAAGACGATGCTGCATTTACGAGGAGACTCCTATGAAGAAATCAATCCGCCCCATGTCATCATAACCCGGCATGGTTGTGAGGTAACTGCACAGGTGAGGGTTCATGGGAGTTCAGAGCTCCACAGGGGAGACATGCAGCTACTTCCTATCAGAGATGTTTTTGTGGAGGGCGGAGAAGAGACCTGGAAAGGACATGCAAACATTATCCTGGGACATTTGTGCTTTTTATAG

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081105-162 Predicted to be an extracellular matrix structural constituent. Predicted to be located in extracellular region.

Ensembl:

ensembl_id ENSDART00000134775

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071920 lncRNA upstream 202821 14612986 ~ 14652650 (+) True XLOC_035513
TCONS_00072165 lncRNA upstream 294041 14558645 ~ 14561430 (+) True XLOC_035512
TCONS_00072164 lncRNA upstream 609118 14241585 ~ 14246353 (+) True XLOC_035509
TCONS_00069651 lncRNA upstream 835332 13971417 ~ 14020139 (+) True XLOC_035505
TCONS_00072166 lncRNA downstream 186008 15069700 ~ 15080573 (+) False XLOC_035519
TCONS_00069673 lncRNA downstream 361416 15245108 ~ 15249624 (+) True XLOC_035520
TCONS_00069680 lncRNA downstream 592933 15476625 ~ 15479807 (+) True XLOC_035525
TCONS_00072167 lncRNA downstream 1375894 16259586 ~ 16265811 (+) True XLOC_035527
TCONS_00072168 lncRNA downstream 1680261 16563953 ~ 16582042 (+) True XLOC_035529
TCONS_00069658 mRNA upstream 27021 14778292 ~ 14828450 (+) False XLOC_035514
TCONS_00069659 mRNA upstream 36694 14792830 ~ 14818777 (+) True XLOC_035514
TCONS_00069657 mRNA upstream 73184 14710542 ~ 14782287 (+) False XLOC_035514
TCONS_00069655 mRNA upstream 413659 14381272 ~ 14441812 (+) True XLOC_035510
TCONS_00069653 mRNA upstream 684895 14158021 ~ 14170576 (+) False XLOC_035508
TCONS_00069662 mRNA downstream 2760 14886452 ~ 14910223 (+) False XLOC_035517
TCONS_00069663 mRNA downstream 7129 14890821 ~ 14909870 (+) True XLOC_035517
TCONS_00069664 mRNA downstream 31640 14915332 ~ 14985276 (+) False XLOC_035518
TCONS_00069665 mRNA downstream 75895 14959587 ~ 14975585 (+) False XLOC_035518
TCONS_00069666 mRNA downstream 75904 14959596 ~ 14982904 (+) True XLOC_035518
TCONS_00069660 other upstream 49181 14806174 ~ 14806290 (+) True XLOC_035515
TCONS_00069656 other upstream 439648 14415698 ~ 14415823 (+) True XLOC_035511
TCONS_00069654 other upstream 684899 14169903 ~ 14170572 (+) True XLOC_035508
TCONS_00069647 other upstream 911330 13888818 ~ 13944141 (+) False XLOC_035504
TCONS_00069632 other upstream 1701893 13143165 ~ 13153578 (+) True XLOC_035494
TCONS_00069670 other downstream 186008 15069700 ~ 15078299 (+) False XLOC_035519
TCONS_00069671 other downstream 194428 15078120 ~ 15080573 (+) True XLOC_035519
TCONS_00069676 other downstream 370913 15254605 ~ 15259417 (+) True XLOC_035522
TCONS_00069678 other downstream 386171 15269863 ~ 15275437 (+) True XLOC_035523
TCONS_00069685 other downstream 1139778 16023470 ~ 16079793 (+) False XLOC_035526

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000010_05636005_05648665.mRNA True 2211 mRNA 0.49 25 CI01000010 5635906 ~ 5648665 (-)