RNA id: TU207413


Basic Information

Item Value
RNA id TU207413
length 1324
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G153124
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8540378 ~ 8588188 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACCGATTTATTACAGTATAGAAATTGCTTACTTCTTACACATAAGCTACAACAAAACTCTTCATATAATTAAAtcattcattttgaaaaatcACTATTCTCAAAAGTGGACAAATGCAATAAATCTAGTGAagcacagacatttttttttgaaatacatCATCTCAAAGTTACATAATTATGGTTTTTAAGACATTGatagaaatgtgtaaaaatctcATTTCTCCAGGagcaataaaaaatatttcataTGTGAACTGAACATTCACAGCGGCCGGGATAGCAAAGTGAGGACGGTATAAGTTACTCATAATAAACTGTAGTTCACATTTAATAAAAGATGATATCATGTATTCAGACACAAGTGTGGATAGTACTGTTGCAAGAAACGATTAAGCTGAACTCGTTTTCAATTCAGAGAGTggaatttatgtaaaaaaaattaaaaaatatacatgaGAGAGACATAACCAATACATAAGAGAACCATATTTAAAACACAGTTCTTTCCAGTTTAAAGCCATCAGTGAGGAAAGGACTTTACCGTGTAAACTGGAATCTACGCCAATAAAACATTACTGTTCAGTCATATGTTTGATCCcaacaaactaataaaaaggTAAATTAGAGATATTAATTAACTGATTGTCAGGTTGGTTTAACTCATGTTGTTGAAGACACTACGATGTTTTAAGTGTTAGTAGAAAGGAGACAGATAAGCAGACGGAGGAGCATAAACTGAGCATAACGATCAACTCCTCCTAGTTTCCACAGGCACCAGACTCTGGCCAGCAGGGACTGTCAgggtcccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagaatacaaacacacattgtCAACATGGTCCAGTTCTCTCATTGGCATATGCATTTTTCTTTGTTAGTAGCacattatacatatataatatctGTTTTATAATAACATGAAGAGTAGTAATAAGAAGAATACTATATTTTACAGGCTTGATTTGTCCGGTGCCAGTTAGTTAAACTGCTCTTTTAATGTcatgacaataaaaaatatctttCTGTTGTCTCTTCGTAAGAATCACTATAAAatctgtgtgtaagtgtgtgtgtgtgtgtgtgtgtgtggtgagctGAGGTGTCCTATAGGTTGCTGAAGAGTTCATTTTTCTTGGTCCAGTCCATGGGCGGGGCTCTCTTGTTGGAGCGTTTCTGGTGGGCGCGCTCTTTGACCTGCTGCAGGGACAGGTTGAGCGCTGGGATGGCGTCTGCGATGAAACTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207394 lncRNA downstream 27927 8463179 ~ 8558912 (-) True G153111
TU207400 lncRNA downstream 48883 8490056 ~ 8537956 (-) True G153116
TU207395 lncRNA downstream 116546 8468304 ~ 8470293 (-) True G153112
TU207389 lncRNA downstream 132171 8450022 ~ 8454668 (-) True G153106
TU207140 lncRNA downstream 293582 8293038 ~ 8293257 (-) True G152925
TU207421 lncRNA upstream 24089 8612277 ~ 8616112 (-) True G153130
TU207447 lncRNA upstream 56596 8644784 ~ 8645025 (-) True G153142
TU207448 lncRNA upstream 58895 8647083 ~ 8647291 (-) True G153143
TU207443 lncRNA upstream 71423 8659611 ~ 8684753 (-) False G153139
TU207442 lncRNA upstream 92459 8680647 ~ 8684753 (-) True G153139
XM_039823763.1 mRNA downstream 66252 8513629 ~ 8520587 (-) True LOC120573875
XM_039823764.1 mRNA downstream 66254 8513629 ~ 8520585 (-) False LOC120573875
XM_039826095.1 mRNA downstream 74999 8506317 ~ 8511840 (-) True LOC120575363
XM_039825717.1 mRNA downstream 82000 8488379 ~ 8504839 (-) False recql5
XM_039824671.1 mRNA upstream 38895 8627083 ~ 8640435 (-) False rabep2
XM_039824670.1 mRNA upstream 38895 8627083 ~ 8640433 (-) True rabep2
XM_039825844.1 mRNA upstream 63444 8651632 ~ 8659219 (-) True si:ch211-11k18.4
XM_039825208.1 mRNA upstream 72114 8660302 ~ 8665654 (-) True nudt9
XM_039824521.1 mRNA upstream 151443 8739631 ~ 8768700 (-) True mapk8ip3
TU207167 other downstream 142458 8441179 ~ 8444381 (-) True G152952
XR_005641918.1 other downstream 486441 8082138 ~ 8100398 (-) False LOC120574885
TU206683 other downstream 1866196 6719784 ~ 6720643 (-) True G152567
TU206522 other downstream 2358725 6182408 ~ 6228114 (-) True G152441
TU206278 other downstream 2973171 5610556 ~ 5613668 (-) False atp5mf
TU207482 other upstream 143209 8731397 ~ 8733019 (-) True G153172
TU207525 other upstream 224154 8812342 ~ 8816276 (-) False natd1
TU207545 other upstream 265572 8853760 ~ 8856957 (-) True tufm
TU207546 other upstream 265572 8853760 ~ 8857571 (-) False tufm
TU207547 other upstream 265572 8853760 ~ 8856957 (-) False tufm

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000055_01806372_01832654.mRNA True 4064 mRNA 0.40 7 CI01000055 1805410 ~ 1834592 (-)