RNA id: XM_039823792.1


Basic Information

Item Value
RNA id XM_039823792.1
length 2294
RNA type mRNA
GC content 0.47
exon number 13
gene id eps8l1a
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8959248 ~ 8969045 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGGAGGGagcatgtgtgagtgttttAGAGAATCAGACGAGAGTGAAAGCCACACAGAATAACTGCGAAGGGAAAGCCAGACTTGTTTTTCTCGTTTCTGCATATGTCAAGAAGGTAGGATTCTCGTGTAAACAGCTCAGCTTAGTGCTCTTACAACTCAGCATGAGGATTGGTCTATGTGCCCTGGATTTAAACACACAAAGCGCACTAAAAGATGTCTGCATCACCGCCTCCGGTGGCCCCTAGAAAGCATTCAGGTGTCAGAGTCATGATAATGCCAGGAGAGCAGCCTCCTCCTAGTGGCCTGCCCATCTACACAAATTTTGGCAAAGAAAAGGGTACCAGTGGGGAGTCAAATGATACATCTCTATTGAATGCAGAGAGAGAAGTGGAGATTATGAACCACTGCTTTGACGACGTGGAGCGATTCTTGGCTCGCTTGCAGCAGACAGCTGAGGCCCAGAGTGTTCTCAAccaaacaaagaagaagaaaagcagaAAGAGCAAGAAGAATAAGGACCAAGATGATGATTTGTTGACCCTGAAAGCTTGCCCTCCATCAGAGGAAGAATTTGTGGACATCTTTCAGAAAATCAAGTACTCCCTCTGTCTTCTTGACCGTCTAAAGTCATCCATCGCAGAGCCTGATGCACCAGAGCTGCTGCATCCCATCTTTGTGCCTCTTAGACTGATGGTGGAAACCACTGGAGGGCCATCGTTAGGTGCATCAGTGGTCAGTCCTGCTATGACCAGTGGTGCTGTTTCACTGCTTCAGAAGCACCTGACTGAGGAGGAAAAACAGCTGTGGACTTCCTTAGGACCTAACTGGATTTCAAGctggtctgtgtgttgtgtgtgtgtaaatcttGGTTTGAGAGTGTGTTATGTTGCTCTAACAAAATATTCTTGCCCTTTTTCCAGTTCGCACCTTAGTGTGTCTGGTTCTCCGTACTCACCTGTCTTCCTGGATGGGTGGCAGCCTCAGGCCTATAACTCAACTGGCCAGCTTATTGAAGATCCCATCACGTCACAGCACAAACAAGATGCTTTCAGGGAAAGTAGGCAGGCGCAGACTTTACATGACCAAGCTCGAAGGACAGCGGAGGGCCATGGTGCAGGCACTGATGAAGTAGAAGGAAATGGGCTCCCACCAGAGGGTGAGAGACTTTACTGCTGCAGTTATGACTTTGTGGCGAGAAACAGCAGTGAGCTTTCTGTGCTACAAGGAGAAACACTAGAGGTTATTGAGTCATCAAAGAGATGGTGGAAGTGTCGGAATCGCTTTGACCAGATCGGATTTGTCCCCTCCAATATCCTGGAGCCTCTGTCTGCACTGAATAACACTGGGAGAGACATCCCAGTGGTACGCAGAGAGTCACAGACGCCTATTTACCCTCGGACAAAGTACTTCTCATATGCTCCACCAAGCCAAGTTGGGACCAATCCTACCGCTACAAGCCAAATGCGACCACAGAGTATGGTTTTACCATCTACAACAATGAAGGAACAAAACAGTGAGCGAGTCCTAAAAATGAATGATGAGCTTTTTCGGCGGTTAGCTGGGAAAAGAGACTCGGTCCGTCCGCTGGTGGTTCCCCGCACCGCTGACACCTCTTCTCCCCTGAACTACCAATCACCGTCTGCCGAGGTGGAGGCCTGGCTCACCGCCAAAGGCTTCAGTCAGCAGACAGTTCAGAGTCTGGGCATTTTAAATGGAGCACAGCTTTTTTCCCTGAACAAGGAGGAGCTCCGCACTGTGTCACCAGAGGAAGGtgcaagagtctacagccaaaTTATGGTGCAGAAGGCCCTTCTCGAGGATGTGCACAAAGCCTCGGAACTAGAAACGGTGATGGAGAAACAAAAGCTGAAGATTGACCTGAAATCCGAGAGTGATGTAATGTGACGGTGATATTAAAGATTCGGATGATCAATGGAGATACCTGTGGTATTGCATTTACTGGATGCACAAAGTGATGTTGCAGATGGGTTTTAATCGTTTATTCATACATGCTGTTATATCTAGTATGTGCTACAGATCTAGCAGCAAAAGCGCACTGTAAAGCTAGCTAGAGTGAGTAAGTAAAGCTCACTCACTAATACTGTGATTAACATTGGGACTATTATGTACTATAgatttttacatgttttaaacTTTAACTTCTCGCAAGagttttacttaaaggtccaatgacatggtgctctttggatgcttttatatagaccttagtggtcccctaatactgtatctgaagtctcttttatatagaccttagtggtcccctaatactgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207323 lncRNA upstream 20443 8924587 ~ 8938805 (+) False G153058
TU207322 lncRNA upstream 31778 8924587 ~ 8927470 (+) True G153058
TU207309 lncRNA upstream 55402 8895639 ~ 8903846 (+) True G153049
TU207312 lncRNA upstream 55402 8895639 ~ 8903846 (+) False G153049
TU207270 lncRNA upstream 149216 8806854 ~ 8810032 (+) True G153026
TU207360 lncRNA downstream 35783 9004828 ~ 9008768 (+) True G153084
TU207366 lncRNA downstream 42193 9011238 ~ 9014247 (+) True G153088
TU207379 lncRNA downstream 70646 9039691 ~ 9041872 (+) False asphd1
TU207597 lncRNA downstream 74472 9043517 ~ 9046161 (+) True G153239
TU207625 lncRNA downstream 151413 9120458 ~ 9120758 (+) True G153254
XM_039823973.1 mRNA upstream 64340 8876256 ~ 8894908 (+) True pold1
XM_039823974.1 mRNA upstream 64518 8882723 ~ 8894730 (+) False pold1
XM_039823978.1 mRNA upstream 92719 8863841 ~ 8866529 (+) True aspdh
XM_039823979.1 mRNA upstream 92719 8863847 ~ 8866529 (+) False aspdh
XM_039825139.1 mRNA upstream 98749 8856478 ~ 8860499 (+) False hspbp1
XM_039825618.1 mRNA downstream 67856 9036901 ~ 9042045 (+) True asphd1
XM_039824667.1 mRNA downstream 910257 9879302 ~ 9887967 (+) True LOC120574409
XM_039824673.1 mRNA downstream 969918 9938963 ~ 9939633 (+) True LOC120574415
XM_039824991.1 mRNA downstream 971478 9940523 ~ 10027725 (+) False LOC120574577
XM_039824992.1 mRNA downstream 971844 9940889 ~ 10027725 (+) False LOC120574577
TU207249 other upstream 196666 8757246 ~ 8762582 (+) True G153016
TU207220 other upstream 257477 8696968 ~ 8701771 (+) True ypel3
XR_005641904.1 other upstream 274483 8666470 ~ 8684765 (+) False mapk3
TU207168 other upstream 509951 8445446 ~ 8449297 (+) False mcrip1
unassigned_transcript_719 other downstream 92271 9061316 ~ 9067135 (+) True LOC120574330
TU207609 other downstream 104826 9073871 ~ 9116603 (+) True G153245
unassigned_transcript_720 other downstream 112802 9081847 ~ 9086215 (+) True LOC120574580
unassigned_transcript_721 other downstream 132140 9101185 ~ 9101623 (+) True LOC120574615
unassigned_transcript_722 other downstream 133552 9102597 ~ 9103168 (+) True LOC120574625

Expression Profile